Wall clock time and date at job start Sun Mar 29 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47266 * 2 1 4 4 N 1.29948 * 126.28813 * 270.02895 * 3 2 1 5 5 O 1.21295 * 110.25220 * 179.68143 * 4 3 2 6 6 C 1.33641 * 109.81196 * 0.47185 * 5 4 3 7 7 C 1.50693 * 126.55346 * 179.80199 * 6 5 4 8 8 H 1.08999 * 109.47479 * 194.68113 * 7 6 5 9 9 C 1.53002 * 109.47388 * 74.68224 * 7 6 5 10 10 N 1.46495 * 109.47263 * 314.68387 * 7 6 5 11 11 C 1.36935 * 120.00021 * 245.68897 * 10 7 6 12 12 H 1.08008 * 120.00426 * 145.46218 * 11 10 7 13 13 C 1.38818 * 120.00079 * 325.45158 * 11 10 7 14 14 N 1.31617 * 119.99597 * 346.03543 * 13 11 10 15 15 Si 1.86795 * 119.99955 * 166.02918 * 13 11 10 16 16 H 1.48501 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47000 * 120.00667 * 15 13 11 18 18 H 1.48501 * 109.47418 * 240.00510 * 15 13 11 19 19 C 1.46499 * 120.00143 * 65.68187 * 10 7 6 20 20 C 1.53006 * 109.46844 * 95.61449 * 19 10 7 21 21 N 1.31135 * 106.89308 * 359.53428 * 6 5 4 22 22 H 1.08998 * 109.47406 * 60.00122 * 1 2 3 23 23 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46808 * 299.99852 * 1 2 3 25 25 H 1.09003 * 109.46738 * 239.99644 * 2 1 3 26 26 H 1.08996 * 109.46984 * 120.00520 * 2 1 3 27 27 H 1.08993 * 109.47085 * 300.00501 * 9 7 6 28 28 H 1.09001 * 109.46925 * 60.00186 * 9 7 6 29 29 H 1.08999 * 109.47251 * 179.97438 * 9 7 6 30 30 H 0.96998 * 119.99579 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47182 * 335.61765 * 19 10 7 32 32 H 1.09000 * 109.47364 * 215.61228 * 19 10 7 33 33 H 1.09005 * 109.46620 * 180.02562 * 20 19 10 34 34 H 1.09000 * 109.46960 * 300.00026 * 20 19 10 35 35 H 1.08992 * 109.47148 * 60.00204 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2882 2.1460 -1.0474 5 8 2.6710 3.2471 -0.7124 6 6 2.7063 3.3281 0.6211 7 6 3.1284 4.5227 1.4369 8 1 3.3022 4.2155 2.4681 9 6 2.0248 5.5817 1.3994 10 7 4.3620 5.0832 0.8799 11 6 5.5212 5.0449 1.6078 12 1 6.4690 4.9114 1.1075 13 6 5.4782 5.1779 2.9889 14 7 4.3818 5.6106 3.5745 15 14 6.9764 4.7427 4.0162 16 1 8.0720 4.2847 3.1245 17 1 7.4224 5.9401 4.7731 18 1 6.6260 3.6579 4.9679 19 6 4.3555 5.6844 -0.4560 20 6 4.1712 7.1983 -0.3330 21 7 2.2977 2.1712 1.0840 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8510 5.8890 0.3683 28 1 1.1070 5.1648 1.8140 29 1 2.3300 6.4456 1.9899 30 1 4.3516 5.7032 4.5396 31 1 3.5359 5.2648 -1.0394 32 1 5.3016 5.4729 -0.9543 33 1 4.1659 7.6456 -1.3270 34 1 3.2251 7.4098 0.1653 35 1 4.9908 7.6179 0.2503 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299371433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:25 Heat of formation + Delta-G solvation = 56.814266 kcal Electronic energy + Delta-G solvation = -17849.374687 eV Core-core repulsion = 15078.502647 eV Total energy + Delta-G solvation = -2770.872039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.38984 -38.61469 -37.21572 -34.75395 -33.88022 -32.77207 -31.29213 -30.19574 -26.28501 -25.89428 -25.13280 -23.78061 -22.56404 -21.21356 -19.15908 -18.81929 -17.89590 -17.06534 -16.10856 -15.93081 -15.53891 -15.37785 -14.94565 -14.18164 -13.96380 -13.88807 -13.46205 -13.32052 -13.29068 -12.97367 -12.81469 -12.65462 -12.39875 -12.32084 -12.20632 -12.12588 -12.02260 -11.86970 -11.61089 -11.39473 -10.82922 -10.54188 -8.77340 -7.97363 -5.50696 0.26707 1.34227 1.46823 1.50976 1.58929 2.05068 2.46253 2.77526 3.13080 3.30049 3.59114 4.04047 4.23270 4.27227 4.47059 4.48501 4.50205 4.67900 4.84689 4.88060 4.89069 4.92130 4.97460 5.01125 5.09034 5.17133 5.25181 5.32922 5.44383 5.54296 5.62804 5.71233 6.39154 7.04961 7.29519 7.69819 8.21908 9.09229 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.008217 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.717423 B = 3406.857403 C = 3983.311036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C 0.162 3.838 4 N -0.420 5.420 5 O 0.056 5.944 6 C 0.197 3.803 7 C 0.264 3.736 8 H 0.116 0.884 9 C -0.128 4.128 10 N -0.583 5.583 11 C -0.278 4.278 12 H 0.061 0.939 13 C -0.024 4.024 14 N -0.910 5.910 15 Si 0.960 3.040 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.290 1.290 19 C 0.133 3.867 20 C -0.153 4.153 21 N -0.524 5.524 22 H 0.051 0.949 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.258 0.742 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -5.343 -5.673 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.111 4.111 4 N -0.136 5.136 5 O 0.006 5.994 6 C -0.026 4.026 7 C 0.152 3.848 8 H 0.133 0.867 9 C -0.187 4.187 10 N -0.304 5.304 11 C -0.407 4.407 12 H 0.079 0.921 13 C -0.222 4.222 14 N -0.553 5.553 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.217 1.217 19 C 0.009 3.991 20 C -0.212 4.212 21 N -0.259 5.259 22 H 0.070 0.930 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.278 -5.843 -6.037 10.488 hybrid contribution 0.974 0.112 0.828 1.284 sum -5.304 -5.730 -5.209 9.386 Atomic orbital electron populations 1.21688 0.92003 1.04149 1.01749 1.20135 0.97810 0.83530 1.05463 1.26679 0.99349 1.01713 0.83354 1.74464 1.20186 0.93814 1.25087 1.85247 1.61593 1.26891 1.25677 1.31520 0.91144 0.98360 0.81536 1.19259 0.87045 0.83830 0.94653 0.86671 1.21979 0.96309 0.99029 1.01419 1.44066 1.06062 1.64149 1.16105 1.19327 0.86589 1.45336 0.89493 0.92089 1.25801 0.99547 0.98233 0.98658 1.69955 1.28402 1.47155 1.09740 0.85339 0.79858 0.77326 0.78657 1.19797 1.21144 1.21692 1.21089 0.99308 0.92913 0.85839 1.22176 1.01118 0.97311 1.00572 1.71930 1.20745 1.02847 1.30407 0.93033 0.88149 0.93170 0.87798 0.88016 0.92519 0.92765 0.90981 0.93261 0.92693 0.94027 0.91593 0.93256 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.89 71.98 0.71 -2.14 16 2 C -0.03 -0.77 6.56 29.85 0.20 -0.58 16 3 C 0.16 5.97 7.47 138.46 1.03 7.00 16 4 N -0.42 -16.56 12.16 -60.34 -0.73 -17.29 16 5 O 0.06 2.34 9.33 74.85 0.70 3.04 16 6 C 0.20 8.58 7.20 88.38 0.64 9.22 16 7 C 0.26 12.05 2.35 44.24 0.10 12.15 16 8 H 0.12 6.07 5.72 -2.39 -0.01 6.06 16 9 C -0.13 -5.11 8.00 71.98 0.58 -4.53 16 10 N -0.58 -27.67 2.36 -682.20 -1.61 -29.28 16 11 C -0.28 -14.50 9.54 84.04 0.80 -13.70 16 12 H 0.06 3.21 7.87 -2.91 -0.02 3.19 16 13 C -0.02 -1.26 4.96 84.86 0.42 -0.83 16 14 N -0.91 -48.49 11.07 21.65 0.24 -48.25 16 15 Si 0.96 42.92 29.58 68.60 2.03 44.94 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 C 0.13 5.39 5.42 86.38 0.47 5.86 16 20 C -0.15 -5.57 9.99 71.98 0.72 -4.85 16 21 N -0.52 -22.31 11.55 -303.22 -3.50 -25.82 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 3.11 7.84 -2.39 -0.02 3.10 16 30 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.05 2.10 5.88 -2.39 -0.01 2.08 16 32 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 1.80 6.06 -2.39 -0.01 1.79 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -58.47 290.27 3.86 -54.61 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.08 Total: 10.44 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.67 Total: 7.60 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -5.61 Total: -120.63 kcal Atomic # 8 Polarization: 2.34 SS G_CDS: 0.70 Total: 3.04 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -58.47 3.86 -54.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299371433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.421 kcal (2) G-P(sol) polarization free energy of solvation -58.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds