Wall clock time and date at job start Sun Mar 29 2020 22:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47500 * 2 1 4 4 C 1.36935 * 119.99518 * 275.32605 * 3 2 1 5 5 H 1.08000 * 120.00221 * 37.65763 * 4 3 2 6 6 C 1.38806 * 120.00139 * 217.65027 * 4 3 2 7 7 N 1.31617 * 119.99919 * 21.22326 * 6 4 3 8 8 Si 1.86808 * 120.00194 * 201.22711 * 6 4 3 9 9 H 1.48497 * 109.46932 * 60.00155 * 8 6 4 10 10 H 1.48501 * 109.46823 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46646 * 299.99806 * 8 6 4 12 12 C 1.46498 * 120.00134 * 95.32875 * 3 2 1 13 13 C 1.50702 * 109.46992 * 270.00172 * 12 3 2 14 14 N 1.29953 * 126.28599 * 269.97671 * 13 12 3 15 15 O 1.21297 * 110.24900 * 179.72365 * 14 13 12 16 16 C 1.33642 * 109.81122 * 0.47070 * 15 14 13 17 17 C 1.50702 * 126.54883 * 179.79916 * 16 15 14 18 18 C 1.53000 * 109.47349 * 299.68377 * 17 16 15 19 19 C 1.53000 * 109.47386 * 59.68627 * 17 16 15 20 20 N 1.31128 * 106.89952 * 359.53910 * 16 15 14 21 21 H 1.09001 * 109.46560 * 59.99988 * 1 2 3 22 22 H 1.08992 * 109.46965 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46853 * 300.00774 * 1 2 3 24 24 H 1.09002 * 109.47367 * 239.99210 * 2 1 3 25 25 H 1.09007 * 109.46931 * 119.99766 * 2 1 3 26 26 H 0.97002 * 120.00119 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.47112 * 150.00334 * 12 3 2 28 28 H 1.09000 * 109.47103 * 29.99545 * 12 3 2 29 29 H 1.09004 * 109.46855 * 179.68794 * 17 16 15 30 30 H 1.09004 * 109.46801 * 60.00384 * 18 17 16 31 31 H 1.08997 * 109.47174 * 300.00454 * 18 17 16 32 32 H 1.08996 * 109.47318 * 179.97438 * 18 17 16 33 33 H 1.08995 * 109.47209 * 300.00063 * 19 17 16 34 34 H 1.09005 * 109.46825 * 60.00023 * 19 17 16 35 35 H 1.08997 * 109.47515 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1429 2.0633 -1.1808 5 1 1.4094 1.9289 -1.9620 6 6 3.2117 2.9277 -1.3737 7 7 4.3022 2.7980 -0.6482 8 14 3.1024 4.2751 -2.6630 9 1 1.9660 5.1758 -2.3426 10 1 4.3654 5.0562 -2.6709 11 1 2.8888 3.6648 -3.9998 12 6 2.3737 2.0325 1.2632 13 6 1.1618 2.7275 1.8283 14 7 0.8001 3.9538 1.5955 15 8 -0.2225 4.2108 2.1951 16 6 -0.6169 3.1437 2.8964 17 6 -1.8356 3.0494 3.7778 18 6 -1.7366 4.0872 4.8978 19 6 -3.0901 3.3171 2.9440 20 7 0.2561 2.1927 2.6665 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.0490 3.4023 -0.7828 27 1 3.1621 2.7639 1.0857 28 1 2.7261 1.2831 1.9719 29 1 -1.8938 2.0512 4.2117 30 1 -1.6784 5.0855 4.4639 31 1 -0.8428 3.8965 5.4918 32 1 -2.6182 4.0193 5.5350 33 1 -3.0319 4.3153 2.5101 34 1 -3.1607 2.5777 2.1461 35 1 -3.9716 3.2485 3.5814 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299591196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:58 Heat of formation + Delta-G solvation = 73.896987 kcal Electronic energy + Delta-G solvation = -17707.812283 eV Core-core repulsion = 14937.681006 eV Total energy + Delta-G solvation = -2770.131277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.75716 -36.34837 -36.05719 -34.46128 -31.89236 -30.98055 -29.11513 -27.33604 -26.58317 -23.90480 -23.75123 -22.43553 -20.62415 -19.58026 -17.39848 -16.91712 -16.33088 -15.60625 -14.97503 -14.34682 -13.83753 -13.71860 -13.38886 -13.29424 -12.43214 -12.35207 -12.13015 -11.89346 -11.59956 -11.47207 -11.31076 -11.16905 -11.04820 -10.87041 -10.72331 -10.55054 -10.34294 -10.12131 -10.01442 -9.77413 -9.05896 -8.52635 -6.71466 -5.88708 -3.45923 1.90521 3.10411 3.38089 3.40890 3.42941 3.48570 4.27382 4.47244 4.83112 4.91052 5.00235 5.22044 5.35211 5.45930 5.53258 5.60110 5.65486 5.74782 5.93429 6.06611 6.08638 6.11614 6.35930 6.39579 6.58306 6.67438 6.69006 6.87539 6.92254 7.17469 7.38168 7.77965 8.43363 9.07802 9.09386 9.71472 10.28695 11.14069 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.007827 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.889199 B = 3576.304920 C = 3996.796392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 N -0.568 5.568 4 C -0.265 4.265 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.222 3.778 13 C 0.176 3.824 14 N -0.379 5.379 15 O 0.062 5.938 16 C 0.146 3.854 17 C 0.006 3.994 18 C -0.148 4.148 19 C -0.149 4.149 20 N -0.480 5.480 21 H 0.044 0.956 22 H 0.037 0.963 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.258 0.742 27 H 0.119 0.881 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 0.222 9.432 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 N -0.288 5.288 4 C -0.394 4.394 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.206 1.206 12 C 0.092 3.908 13 C -0.099 4.099 14 N -0.089 5.089 15 O 0.006 5.994 16 C -0.075 4.075 17 C -0.014 4.014 18 C -0.206 4.206 19 C -0.207 4.207 20 N -0.215 5.215 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.520 0.422 8.900 13.786 hybrid contribution -0.303 0.799 -0.632 1.063 sum -10.823 1.222 8.268 13.675 Atomic orbital electron populations 1.22321 1.00001 0.99121 1.01334 1.20894 0.91756 0.86432 0.99117 1.43695 1.75354 1.08256 1.01514 1.18924 1.04868 1.22124 0.93507 0.92252 1.25169 0.93994 1.00733 0.98105 1.69934 1.03193 1.37237 1.42296 0.86428 0.77212 0.82298 0.81273 1.20586 1.21377 1.20577 1.19562 0.88301 0.96705 0.86234 1.28076 1.01036 0.87740 0.93084 1.74694 0.98918 1.19314 1.15934 1.85243 1.31170 1.38180 1.44779 1.28615 0.98904 0.83510 0.96510 1.19633 0.86775 1.02449 0.92558 1.21882 1.02713 0.98711 0.97339 1.21883 0.95720 1.02991 1.00139 1.71883 1.04068 1.28842 1.16673 0.93725 0.94387 0.93126 0.93316 0.94274 0.93159 0.86391 0.92380 0.87364 0.91639 0.91988 0.91026 0.91625 0.91933 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 10.21 37.16 0.38 -2.99 16 2 C 0.14 3.19 6.44 -4.04 -0.03 3.17 16 3 N -0.57 -14.67 2.42 -174.61 -0.42 -15.09 16 4 C -0.26 -7.44 9.45 -15.06 -0.14 -7.59 16 5 H 0.06 1.69 7.91 -52.49 -0.42 1.27 16 6 C 0.02 0.59 4.96 -17.43 -0.09 0.51 16 7 N -0.89 -25.61 11.46 55.49 0.64 -24.97 16 8 Si 0.90 22.40 29.60 -169.99 -5.03 17.37 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.22 5.53 5.95 -5.19 -0.03 5.50 16 13 C 0.18 4.11 7.64 -156.37 -1.19 2.91 16 14 N -0.38 -8.97 12.16 30.90 0.38 -8.59 16 15 O 0.06 1.23 11.31 18.10 0.20 1.43 16 16 C 0.15 2.52 7.02 -13.06 -0.09 2.43 16 17 C 0.01 0.07 3.39 -91.77 -0.31 -0.24 16 18 C -0.15 -1.37 9.18 37.16 0.34 -1.03 16 19 C -0.15 -1.48 9.18 37.16 0.34 -1.14 16 20 N -0.48 -9.79 10.62 -9.87 -0.10 -9.90 16 21 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 1.05 7.02 -51.93 -0.36 0.69 16 24 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 25 H 0.04 0.81 7.83 -51.93 -0.41 0.41 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.12 3.27 5.51 -51.93 -0.29 2.99 16 28 H 0.06 1.35 7.86 -51.93 -0.41 0.95 16 29 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -31.32 298.11 -5.91 -37.23 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.24 Total: -3.50 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -0.82 Total: 1.53 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.49 Total: -58.55 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.20 Total: 1.43 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.32 -5.91 -37.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299591196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.128 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds