Wall clock time and date at job start Sun Mar 29 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47500 * 2 1 4 4 C 1.36935 * 119.99518 * 275.32605 * 3 2 1 5 5 H 1.08000 * 120.00221 * 37.65763 * 4 3 2 6 6 C 1.38806 * 120.00139 * 217.65027 * 4 3 2 7 7 N 1.31617 * 119.99919 * 21.22326 * 6 4 3 8 8 Si 1.86808 * 120.00194 * 201.22711 * 6 4 3 9 9 H 1.48497 * 109.46932 * 60.00155 * 8 6 4 10 10 H 1.48501 * 109.46823 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46646 * 299.99806 * 8 6 4 12 12 C 1.46498 * 120.00134 * 95.32875 * 3 2 1 13 13 C 1.50702 * 109.46992 * 270.00172 * 12 3 2 14 14 N 1.29953 * 126.28599 * 269.97671 * 13 12 3 15 15 O 1.21297 * 110.24900 * 179.72365 * 14 13 12 16 16 C 1.33642 * 109.81122 * 0.47070 * 15 14 13 17 17 C 1.50702 * 126.54883 * 179.79916 * 16 15 14 18 18 C 1.53000 * 109.47349 * 299.68377 * 17 16 15 19 19 C 1.53000 * 109.47386 * 59.68627 * 17 16 15 20 20 N 1.31128 * 106.89952 * 359.53910 * 16 15 14 21 21 H 1.09001 * 109.46560 * 59.99988 * 1 2 3 22 22 H 1.08992 * 109.46965 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46853 * 300.00774 * 1 2 3 24 24 H 1.09002 * 109.47367 * 239.99210 * 2 1 3 25 25 H 1.09007 * 109.46931 * 119.99766 * 2 1 3 26 26 H 0.97002 * 120.00119 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.47112 * 150.00334 * 12 3 2 28 28 H 1.09000 * 109.47103 * 29.99545 * 12 3 2 29 29 H 1.09004 * 109.46855 * 179.68794 * 17 16 15 30 30 H 1.09004 * 109.46801 * 60.00384 * 18 17 16 31 31 H 1.08997 * 109.47174 * 300.00454 * 18 17 16 32 32 H 1.08996 * 109.47318 * 179.97438 * 18 17 16 33 33 H 1.08995 * 109.47209 * 300.00063 * 19 17 16 34 34 H 1.09005 * 109.46825 * 60.00023 * 19 17 16 35 35 H 1.08997 * 109.47515 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1429 2.0633 -1.1808 5 1 1.4094 1.9289 -1.9620 6 6 3.2117 2.9277 -1.3737 7 7 4.3022 2.7980 -0.6482 8 14 3.1024 4.2751 -2.6630 9 1 1.9660 5.1758 -2.3426 10 1 4.3654 5.0562 -2.6709 11 1 2.8888 3.6648 -3.9998 12 6 2.3737 2.0325 1.2632 13 6 1.1618 2.7275 1.8283 14 7 0.8001 3.9538 1.5955 15 8 -0.2225 4.2108 2.1951 16 6 -0.6169 3.1437 2.8964 17 6 -1.8356 3.0494 3.7778 18 6 -1.7366 4.0872 4.8978 19 6 -3.0901 3.3171 2.9440 20 7 0.2561 2.1927 2.6665 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.0490 3.4023 -0.7828 27 1 3.1621 2.7639 1.0857 28 1 2.7261 1.2831 1.9719 29 1 -1.8938 2.0512 4.2117 30 1 -1.6784 5.0855 4.4639 31 1 -0.8428 3.8965 5.4918 32 1 -2.6182 4.0193 5.5350 33 1 -3.0319 4.3153 2.5101 34 1 -3.1607 2.5777 2.1461 35 1 -3.9716 3.2485 3.5814 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299591196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:57 Heat of formation + Delta-G solvation = 53.707613 kcal Electronic energy + Delta-G solvation = -17708.687760 eV Core-core repulsion = 14937.681006 eV Total energy + Delta-G solvation = -2771.006754 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.42444 -38.23737 -37.15804 -36.07151 -33.91751 -32.55155 -30.93466 -28.56343 -28.07937 -25.83628 -25.07809 -24.02619 -22.39993 -21.05440 -19.15240 -18.70119 -18.02599 -17.11802 -16.66203 -15.77917 -15.68511 -15.38214 -14.99010 -14.29327 -14.18710 -13.64684 -13.45367 -13.30878 -13.05048 -12.99777 -12.78782 -12.68625 -12.64691 -12.39270 -12.26514 -12.15736 -12.02938 -11.97872 -11.75133 -11.51931 -10.72747 -10.62734 -8.77091 -7.99633 -5.61291 0.40375 1.34761 1.41101 1.44403 1.48115 2.09302 2.41611 2.84158 3.15435 3.42148 3.65084 3.96214 4.06835 4.07270 4.35881 4.50005 4.65606 4.70743 4.78443 4.79800 4.84826 4.92970 4.94264 5.00243 5.08134 5.18362 5.25990 5.33136 5.34200 5.37495 5.48258 5.58520 6.33298 7.00029 7.47913 7.66794 8.20885 8.99952 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.007827 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.889199 B = 3576.304920 C = 3996.796392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 N -0.583 5.583 4 C -0.275 4.275 5 H 0.050 0.950 6 C -0.021 4.021 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.289 1.289 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.228 3.772 13 C 0.164 3.836 14 N -0.414 5.414 15 O 0.066 5.934 16 C 0.167 3.833 17 C 0.006 3.994 18 C -0.144 4.144 19 C -0.146 4.146 20 N -0.496 5.496 21 H 0.027 0.973 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.257 0.743 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 0.078 10.491 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.405 4.405 5 H 0.068 0.932 6 C -0.220 4.220 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.216 1.216 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.098 3.902 13 C -0.112 4.112 14 N -0.125 5.125 15 O 0.010 5.990 16 C -0.054 4.054 17 C -0.015 4.015 18 C -0.202 4.202 19 C -0.204 4.204 20 N -0.230 5.230 21 H 0.046 0.954 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.688 0.249 9.964 16.135 hybrid contribution 0.256 0.815 -0.845 1.202 sum -12.431 1.064 9.119 15.454 Atomic orbital electron populations 1.22137 0.98092 1.00966 0.99997 1.21033 0.93166 0.84815 0.99550 1.43856 1.75856 1.09582 1.01113 1.19035 1.04475 1.22741 0.94208 0.93195 1.25788 0.93803 1.02369 1.00049 1.70032 1.03619 1.37882 1.43664 0.85591 0.76737 0.79844 0.79863 1.21570 1.20937 1.19280 1.19229 0.88450 0.96193 0.86328 1.27663 1.01284 0.87997 0.94217 1.74662 1.00515 1.19877 1.17398 1.85187 1.30167 1.38821 1.44872 1.29885 0.99099 0.81637 0.94765 1.20124 0.84644 1.04291 0.92398 1.21905 1.04166 0.97488 0.96659 1.21910 0.96113 1.02181 1.00193 1.71842 1.04500 1.29634 1.16976 0.95385 0.90876 0.93983 0.93718 0.92910 0.93355 0.89473 0.91589 0.85774 0.92027 0.92719 0.87385 0.92107 0.93361 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.92 10.21 71.98 0.73 -5.19 16 2 C 0.14 6.12 6.44 86.38 0.56 6.68 16 3 N -0.58 -30.51 2.42 -706.34 -1.71 -32.22 16 4 C -0.27 -15.70 9.45 84.03 0.79 -14.91 16 5 H 0.05 2.90 7.91 -2.91 -0.02 2.87 16 6 C -0.02 -1.23 4.96 84.86 0.42 -0.81 16 7 N -0.91 -53.78 11.46 21.65 0.25 -53.53 16 8 Si 0.95 46.63 29.60 68.60 2.03 48.66 16 9 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.23 11.60 5.95 85.63 0.51 12.11 16 13 C 0.16 7.71 7.64 138.46 1.06 8.77 16 14 N -0.41 -19.83 12.16 -60.32 -0.73 -20.57 16 15 O 0.07 2.59 11.31 74.85 0.85 3.44 16 16 C 0.17 5.54 7.02 88.38 0.62 6.16 16 17 C 0.01 0.11 3.39 -11.54 -0.04 0.07 16 18 C -0.14 -2.17 9.18 71.98 0.66 -1.51 16 19 C -0.15 -2.41 9.18 71.98 0.66 -1.75 16 20 N -0.50 -19.89 10.62 -303.19 -3.22 -23.11 16 21 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.04 1.69 7.02 -2.38 -0.02 1.67 16 24 H 0.04 1.97 8.08 -2.39 -0.02 1.95 16 25 H 0.05 2.15 7.83 -2.38 -0.02 2.13 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.09 5.02 5.51 -2.39 -0.01 5.01 16 28 H 0.07 3.14 7.86 -2.39 -0.02 3.12 16 29 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.94 8.14 -2.38 -0.02 0.93 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.68 298.11 4.51 -64.17 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.07 Total: 3.53 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.98 Total: 9.62 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -5.41 Total: -129.42 kcal Atomic # 8 Polarization: 2.59 SS G_CDS: 0.85 Total: 3.44 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -68.68 4.51 -64.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299591196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.878 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds