Wall clock time and date at job start Sun Mar 29 2020 22:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47124 * 2 1 4 4 C 1.36930 * 120.00078 * 270.88376 * 3 2 1 5 5 H 1.07995 * 120.00214 * 326.02491 * 4 3 2 6 6 C 1.38813 * 119.99889 * 146.01791 * 4 3 2 7 7 N 1.31622 * 120.00045 * 336.66407 * 6 4 3 8 8 Si 1.86802 * 120.00022 * 156.66126 * 6 4 3 9 9 H 1.48503 * 109.46775 * 90.00195 * 8 6 4 10 10 H 1.48500 * 109.47135 * 210.00141 * 8 6 4 11 11 H 1.48499 * 109.46958 * 330.00348 * 8 6 4 12 12 C 1.46505 * 119.99714 * 90.88784 * 3 2 1 13 13 C 1.53008 * 109.47025 * 90.00086 * 12 3 2 14 14 H 1.08995 * 109.46837 * 59.99493 * 13 12 3 15 15 O 1.42895 * 109.47062 * 299.99823 * 13 12 3 16 16 C 1.52998 * 109.46933 * 179.97438 * 13 12 3 17 17 N 1.46495 * 109.46958 * 185.00146 * 16 13 12 18 18 C 1.34950 * 126.04096 * 124.94904 * 17 16 13 19 19 C 1.35320 * 107.74990 * 180.02562 * 18 17 16 20 20 C 1.39877 * 107.91582 * 0.02562 * 19 18 17 21 21 N 1.30835 * 108.20442 * 0.02562 * 20 19 18 22 22 H 1.08993 * 109.46805 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46892 * 300.00245 * 1 2 3 24 24 H 1.08997 * 109.46546 * 60.00012 * 1 2 3 25 25 H 1.08999 * 109.46892 * 239.99755 * 2 1 3 26 26 H 1.09000 * 109.47235 * 120.00186 * 2 1 3 27 27 H 0.96999 * 120.00164 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47037 * 329.99855 * 12 3 2 29 29 H 1.08998 * 109.46703 * 209.99415 * 12 3 2 30 30 H 0.96700 * 114.00098 * 300.00057 * 15 13 12 31 31 H 1.08991 * 109.47564 * 64.99941 * 16 13 12 32 32 H 1.09007 * 109.46783 * 304.99530 * 16 13 12 33 33 H 1.07998 * 126.12370 * 0.03956 * 18 17 16 34 34 H 1.07999 * 126.04349 * 180.26314 * 19 18 17 35 35 H 1.07995 * 125.89536 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2294 2.0328 -1.1857 5 1 2.5757 1.4843 -2.0491 6 6 1.9979 3.3984 -1.2779 7 7 1.1735 3.9845 -0.4357 8 14 2.8564 4.4043 -2.5973 9 1 2.0184 4.4310 -3.8230 10 1 3.0615 5.7911 -2.1075 11 1 4.1718 3.7902 -2.9103 12 6 2.2811 2.0652 1.2687 13 6 3.7324 1.8226 1.6879 14 1 4.4020 2.2106 0.9204 15 8 3.9537 0.4200 1.8483 16 6 4.0069 2.5374 3.0125 17 7 5.4255 2.4054 3.3538 18 6 6.2765 3.4192 3.6167 19 6 7.4888 2.8811 3.8851 20 6 7.3747 1.4908 3.7821 21 7 6.1386 1.2046 3.4628 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.0120 4.9388 -0.4999 28 1 1.6114 1.6772 2.0361 29 1 2.1123 3.1351 1.1462 30 1 3.3906 0.0069 2.5171 31 1 3.4007 2.0894 3.7997 32 1 3.7534 3.5931 2.9149 33 1 6.0335 4.4715 3.6137 34 1 8.3849 3.4281 4.1382 35 1 8.1697 0.7769 3.9390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299619168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:16 Heat of formation + Delta-G solvation = 49.230232 kcal Electronic energy + Delta-G solvation = -17531.299942 eV Core-core repulsion = 14760.099034 eV Total energy + Delta-G solvation = -2771.200908 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79912 -37.44726 -35.03635 -32.78956 -31.80917 -30.00992 -29.60024 -28.05650 -25.49539 -23.61396 -21.68460 -20.78972 -20.27524 -20.07751 -17.34538 -16.46955 -15.65422 -15.24196 -14.62969 -14.49249 -13.90409 -13.76867 -13.56276 -13.42989 -12.91509 -12.54713 -12.23711 -11.92382 -11.74501 -11.21560 -11.07003 -10.71237 -10.53137 -10.45402 -10.21522 -10.15699 -10.05625 -9.76628 -9.47752 -8.98949 -8.55922 -8.28061 -6.62001 -5.83972 -3.35828 2.22139 2.84481 3.11824 3.31753 3.39809 3.45403 4.44082 4.69195 5.05345 5.13409 5.23222 5.30995 5.40043 5.53628 5.80141 5.82293 6.00790 6.14849 6.18805 6.21983 6.23092 6.48394 6.55762 6.72039 6.92016 6.95391 7.00760 7.25483 7.30311 7.44166 7.78345 8.03831 8.38383 8.44712 9.13341 9.77626 10.34412 11.15418 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.007858 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.977690 B = 3562.329133 C = 4377.983422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 N -0.574 5.574 4 C -0.249 4.249 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.119 3.881 13 C 0.079 3.921 14 H 0.095 0.905 15 O -0.539 6.539 16 C 0.096 3.904 17 N -0.357 5.357 18 C 0.044 3.956 19 C -0.284 4.284 20 C 0.023 3.977 21 N -0.266 5.266 22 H 0.030 0.970 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.254 0.746 28 H 0.028 0.972 29 H 0.107 0.893 30 H 0.356 0.644 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.926 -1.207 8.892 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 N -0.293 5.293 4 C -0.379 4.379 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.204 1.204 12 C -0.010 4.010 13 C 0.016 3.984 14 H 0.113 0.887 15 O -0.342 6.342 16 C -0.026 4.026 17 N -0.139 5.139 18 C -0.103 4.103 19 C -0.314 4.314 20 C -0.163 4.163 21 N -0.088 5.088 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.124 0.876 30 H 0.201 0.799 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.185 0.815 34 H 0.158 0.842 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.302 -1.855 8.108 9.863 hybrid contribution 0.588 1.451 -0.053 1.567 sum 5.889 -0.403 8.055 9.986 Atomic orbital electron populations 1.22306 1.00005 0.98318 1.01714 1.20864 0.91330 0.87093 0.98656 1.43603 1.74005 1.09939 1.01746 1.19108 1.37509 0.91165 0.90118 0.92082 1.25042 0.97623 0.98529 0.98267 1.69975 1.33707 1.10351 1.39413 0.86446 0.80131 0.79484 0.81721 1.21226 1.21495 1.20392 1.21529 0.89378 1.02789 0.87266 1.23153 1.01748 0.81176 0.92287 0.88663 1.86682 1.64593 1.21069 1.61811 1.22756 0.75982 1.03572 1.00259 1.48865 1.09446 1.03740 1.51887 1.22583 0.91100 0.95043 1.01525 1.21409 0.98413 0.94455 1.17118 1.23859 0.95352 0.95907 1.01147 1.77540 1.05142 1.05045 1.21030 0.95081 0.94008 0.92805 0.94199 0.94262 0.93628 0.95365 0.87593 0.79928 0.90090 0.88026 0.81452 0.84191 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.24 37.16 0.38 -2.88 16 2 C 0.15 3.11 6.12 -4.04 -0.02 3.09 16 3 N -0.57 -13.83 2.37 -173.23 -0.41 -14.24 16 4 C -0.25 -6.71 9.48 -15.06 -0.14 -6.85 16 5 H 0.06 1.68 7.93 -52.49 -0.42 1.27 16 6 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 7 N -0.89 -24.42 11.34 55.49 0.63 -23.79 16 8 Si 0.89 21.24 29.61 -169.99 -5.03 16.20 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.12 2.55 4.99 -4.04 -0.02 2.53 16 13 C 0.08 1.52 3.45 -26.73 -0.09 1.43 16 14 H 0.10 2.17 8.14 -51.93 -0.42 1.75 16 15 O -0.54 -10.42 11.11 -35.23 -0.39 -10.81 16 16 C 0.10 1.50 6.18 -4.05 -0.03 1.47 16 17 N -0.36 -5.83 3.68 -61.37 -0.23 -6.06 16 18 C 0.04 0.62 11.45 -17.22 -0.20 0.43 16 19 C -0.28 -3.83 10.80 -40.01 -0.43 -4.26 16 20 C 0.02 0.35 12.03 -17.36 -0.21 0.14 16 21 N -0.27 -4.67 11.56 30.62 0.35 -4.31 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 26 H 0.04 0.76 6.90 -51.93 -0.36 0.40 16 27 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 28 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.11 2.56 5.33 -51.93 -0.28 2.28 16 30 H 0.36 5.74 8.79 45.56 0.40 6.14 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -30.84 297.00 -5.88 -36.71 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.42 Total: 6.70 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.85 Total: -4.88 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.35 Total: -48.40 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.39 Total: -10.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.84 -5.88 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299619168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.944 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds