Wall clock time and date at job start Sun Mar 29 2020 22:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47124 * 2 1 4 4 C 1.36930 * 120.00078 * 270.88376 * 3 2 1 5 5 H 1.07995 * 120.00214 * 326.02491 * 4 3 2 6 6 C 1.38813 * 119.99889 * 146.01791 * 4 3 2 7 7 N 1.31622 * 120.00045 * 336.66407 * 6 4 3 8 8 Si 1.86802 * 120.00022 * 156.66126 * 6 4 3 9 9 H 1.48503 * 109.46775 * 90.00195 * 8 6 4 10 10 H 1.48500 * 109.47135 * 210.00141 * 8 6 4 11 11 H 1.48499 * 109.46958 * 330.00348 * 8 6 4 12 12 C 1.46505 * 119.99714 * 90.88784 * 3 2 1 13 13 C 1.53008 * 109.47025 * 90.00086 * 12 3 2 14 14 H 1.08995 * 109.46837 * 59.99493 * 13 12 3 15 15 O 1.42895 * 109.47062 * 299.99823 * 13 12 3 16 16 C 1.52998 * 109.46933 * 179.97438 * 13 12 3 17 17 N 1.46495 * 109.46958 * 185.00146 * 16 13 12 18 18 C 1.34950 * 126.04096 * 124.94904 * 17 16 13 19 19 C 1.35320 * 107.74990 * 180.02562 * 18 17 16 20 20 C 1.39877 * 107.91582 * 0.02562 * 19 18 17 21 21 N 1.30835 * 108.20442 * 0.02562 * 20 19 18 22 22 H 1.08993 * 109.46805 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46892 * 300.00245 * 1 2 3 24 24 H 1.08997 * 109.46546 * 60.00012 * 1 2 3 25 25 H 1.08999 * 109.46892 * 239.99755 * 2 1 3 26 26 H 1.09000 * 109.47235 * 120.00186 * 2 1 3 27 27 H 0.96999 * 120.00164 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47037 * 329.99855 * 12 3 2 29 29 H 1.08998 * 109.46703 * 209.99415 * 12 3 2 30 30 H 0.96700 * 114.00098 * 300.00057 * 15 13 12 31 31 H 1.08991 * 109.47564 * 64.99941 * 16 13 12 32 32 H 1.09007 * 109.46783 * 304.99530 * 16 13 12 33 33 H 1.07998 * 126.12370 * 0.03956 * 18 17 16 34 34 H 1.07999 * 126.04349 * 180.26314 * 19 18 17 35 35 H 1.07995 * 125.89536 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2294 2.0328 -1.1857 5 1 2.5757 1.4843 -2.0491 6 6 1.9979 3.3984 -1.2779 7 7 1.1735 3.9845 -0.4357 8 14 2.8564 4.4043 -2.5973 9 1 2.0184 4.4310 -3.8230 10 1 3.0615 5.7911 -2.1075 11 1 4.1718 3.7902 -2.9103 12 6 2.2811 2.0652 1.2687 13 6 3.7324 1.8226 1.6879 14 1 4.4020 2.2106 0.9204 15 8 3.9537 0.4200 1.8483 16 6 4.0069 2.5374 3.0125 17 7 5.4255 2.4054 3.3538 18 6 6.2765 3.4192 3.6167 19 6 7.4888 2.8811 3.8851 20 6 7.3747 1.4908 3.7821 21 7 6.1386 1.2046 3.4628 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.0120 4.9388 -0.4999 28 1 1.6114 1.6772 2.0361 29 1 2.1123 3.1351 1.1462 30 1 3.3906 0.0069 2.5171 31 1 3.4007 2.0894 3.7997 32 1 3.7534 3.5931 2.9149 33 1 6.0335 4.4715 3.6137 34 1 8.3849 3.4281 4.1382 35 1 8.1697 0.7769 3.9390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299619168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:16 Heat of formation + Delta-G solvation = 28.414946 kcal Electronic energy + Delta-G solvation = -17532.202560 eV Core-core repulsion = 14760.099034 eV Total energy + Delta-G solvation = -2772.103526 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91911 -39.04753 -36.75601 -34.07986 -33.72871 -31.50956 -30.83953 -29.66256 -27.11979 -25.34378 -23.19985 -21.99752 -21.73329 -21.48865 -18.98579 -17.90938 -17.16245 -16.83320 -16.35730 -15.96291 -15.60847 -15.30310 -14.95460 -14.71078 -14.33066 -13.94719 -13.60228 -13.52395 -13.16301 -12.97648 -12.84851 -12.48134 -12.30934 -12.14136 -11.91168 -11.83681 -11.52012 -11.43068 -10.97617 -10.56661 -10.22290 -9.41493 -8.55599 -7.83581 -5.39737 1.11005 1.41104 1.45174 1.54478 1.72048 2.05529 2.49412 3.17439 3.40452 3.72302 3.89471 4.05978 4.10711 4.27937 4.42802 4.46556 4.57028 4.62148 4.81153 4.88242 4.89418 4.95895 5.09476 5.21233 5.30614 5.31953 5.54568 5.61460 5.74945 5.86391 6.21616 6.44331 6.91661 7.00504 7.16889 7.87160 8.37194 9.10787 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.007858 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.977690 B = 3562.329133 C = 4377.983422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 N -0.591 5.591 4 C -0.264 4.264 5 H 0.045 0.955 6 C -0.032 4.032 7 N -0.910 5.910 8 Si 0.946 3.054 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.123 3.877 13 C 0.099 3.901 14 H 0.054 0.946 15 O -0.552 6.552 16 C 0.105 3.895 17 N -0.374 5.374 18 C 0.037 3.963 19 C -0.285 4.285 20 C 0.019 3.981 21 N -0.313 5.313 22 H 0.065 0.935 23 H 0.037 0.963 24 H 0.024 0.976 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.254 0.746 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.371 0.629 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.198 0.802 34 H 0.169 0.831 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -0.987 10.044 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 N -0.311 5.311 4 C -0.395 4.395 5 H 0.063 0.937 6 C -0.229 4.229 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.212 1.212 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.004 4.004 13 C 0.036 3.964 14 H 0.072 0.928 15 O -0.357 6.357 16 C -0.017 4.017 17 N -0.156 5.156 18 C -0.109 4.109 19 C -0.315 4.315 20 C -0.167 4.167 21 N -0.134 5.134 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.218 0.782 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.215 0.785 34 H 0.186 0.814 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.033 -1.646 9.280 11.191 hybrid contribution 0.413 1.314 -0.384 1.430 sum 6.446 -0.333 8.897 10.992 Atomic orbital electron populations 1.22148 0.98848 1.00028 1.00012 1.20971 0.92194 0.85897 0.99215 1.43822 1.74649 1.10835 1.01753 1.19194 1.37589 0.91790 0.90925 0.93734 1.25552 0.98165 0.99085 1.00138 1.70063 1.34441 1.10362 1.40556 0.85621 0.78828 0.78323 0.79749 1.21171 1.20913 1.20865 1.21463 0.91141 1.01126 0.86692 1.22623 0.98903 0.81570 0.93297 0.92830 1.86636 1.65163 1.21187 1.62698 1.22570 0.76631 1.04017 0.98436 1.48878 1.09661 1.04123 1.52967 1.23220 0.91007 0.96087 1.00603 1.21818 0.99272 0.94111 1.16260 1.24450 0.95153 0.97330 0.99761 1.77473 1.06581 1.06324 1.23072 0.91628 0.94338 0.95710 0.95210 0.92050 0.93706 0.93765 0.89979 0.78208 0.88230 0.86560 0.78533 0.81378 0.78133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 10.24 71.98 0.74 -5.12 16 2 C 0.14 5.97 6.12 86.38 0.53 6.50 16 3 N -0.59 -28.65 2.37 -701.98 -1.67 -30.31 16 4 C -0.26 -14.50 9.48 84.03 0.80 -13.70 16 5 H 0.04 2.53 7.93 -2.91 -0.02 2.51 16 6 C -0.03 -1.73 4.94 84.86 0.42 -1.31 16 7 N -0.91 -50.16 11.34 21.65 0.25 -49.92 16 8 Si 0.95 44.07 29.61 68.60 2.03 46.10 16 9 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 12 C 0.12 5.27 4.99 86.38 0.43 5.70 16 13 C 0.10 3.77 3.45 30.60 0.11 3.87 16 14 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 15 O -0.55 -20.97 11.11 -148.98 -1.66 -22.62 16 16 C 0.11 3.14 6.18 86.38 0.53 3.67 16 17 N -0.37 -11.66 3.68 -348.07 -1.28 -12.94 16 18 C 0.04 0.95 11.45 83.54 0.96 1.91 16 19 C -0.29 -6.95 10.80 21.99 0.24 -6.71 16 20 C 0.02 0.52 12.03 85.24 1.03 1.54 16 21 N -0.31 -10.62 11.56 -57.02 -0.66 -11.28 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 26 H 0.06 2.27 6.90 -2.39 -0.02 2.26 16 27 H 0.25 13.47 8.31 -92.71 -0.77 12.69 16 28 H 0.04 1.71 8.07 -2.39 -0.02 1.70 16 29 H 0.08 3.99 5.33 -2.39 -0.01 3.97 16 30 H 0.37 11.42 8.79 -74.06 -0.65 10.77 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.12 3.08 8.07 -2.38 -0.02 3.06 16 33 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.20 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -66.44 297.00 3.21 -63.24 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.42 Total: 21.38 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.77 Total: -3.64 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -3.36 Total: -104.45 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.66 Total: -22.62 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.44 3.21 -63.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299619168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.651 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds