Wall clock time and date at job start Sun Mar 29 2020 22:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46918 * 2 1 4 4 C 1.36929 * 120.00370 * 83.20588 * 3 2 1 5 5 H 1.08001 * 120.00415 * 168.47066 * 4 3 2 6 6 C 1.38821 * 119.99945 * 348.47720 * 4 3 2 7 7 N 1.31620 * 119.99908 * 8.68839 * 6 4 3 8 8 Si 1.86803 * 119.99747 * 188.68845 * 6 4 3 9 9 H 1.48501 * 109.47075 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46780 * 120.00089 * 8 6 4 11 11 H 1.48500 * 109.46843 * 239.99696 * 8 6 4 12 12 C 1.46494 * 119.99536 * 263.20529 * 3 2 1 13 13 C 1.52999 * 109.47427 * 264.39334 * 12 3 2 14 14 H 1.08998 * 109.47190 * 306.23027 * 13 12 3 15 15 O 1.42902 * 109.47206 * 66.22638 * 13 12 3 16 16 C 1.53005 * 109.47590 * 186.22564 * 13 12 3 17 17 N 1.46502 * 109.47160 * 174.99595 * 16 13 12 18 18 C 1.34949 * 126.03253 * 124.99976 * 17 16 13 19 19 C 1.35320 * 107.74211 * 179.97438 * 18 17 16 20 20 C 1.39871 * 107.92131 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.19883 * 359.74150 * 20 19 18 22 22 H 1.09003 * 109.47375 * 307.32046 * 1 2 3 23 23 H 1.09002 * 109.47419 * 67.32196 * 1 2 3 24 24 H 1.09002 * 109.47397 * 187.32232 * 1 2 3 25 25 H 1.08995 * 109.47218 * 239.99554 * 2 1 3 26 26 H 1.08997 * 109.46926 * 119.99720 * 2 1 3 27 27 H 0.96994 * 119.99595 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47594 * 144.39093 * 12 3 2 29 29 H 1.09001 * 109.47597 * 24.39002 * 12 3 2 30 30 H 0.96700 * 114.00174 * 60.00495 * 15 13 12 31 31 H 1.08990 * 109.47118 * 295.00010 * 16 13 12 32 32 H 1.09003 * 109.46603 * 54.99738 * 16 13 12 33 33 H 1.07994 * 126.12959 * 0.02562 * 18 17 16 34 34 H 1.08000 * 126.03623 * 180.02562 * 19 18 17 35 35 H 1.07998 * 125.89636 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1143 2.0736 1.1775 5 1 2.6427 3.0149 1.2090 6 6 1.5324 1.5654 2.3308 7 7 1.0387 0.3453 2.3363 8 14 1.4499 2.6134 3.8751 9 1 2.0707 3.9360 3.6094 10 1 0.0309 2.8022 4.2699 11 1 2.1832 1.9345 4.9736 12 6 2.4039 2.0217 -1.2598 13 6 3.9150 1.8875 -1.4587 14 1 4.4327 2.2718 -0.5798 15 8 4.2505 0.5109 -1.6450 16 6 4.3403 2.6874 -2.6916 17 7 5.8000 2.6573 -2.8136 18 6 6.4980 2.2534 -3.8956 19 6 7.8142 2.3784 -3.6075 20 6 7.9243 2.8752 -2.3046 21 7 6.7174 3.0477 -1.8297 22 1 -0.3634 0.6230 0.8173 23 1 -0.3634 0.3962 -0.9482 24 1 -0.3634 -1.0193 0.1310 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.6325 -0.0098 3.1423 28 1 2.1340 3.0773 -1.2284 29 1 1.8843 1.5384 -2.0872 30 1 3.8246 0.1025 -2.4111 31 1 3.8921 2.2476 -3.5825 32 1 4.0055 3.7196 -2.5882 33 1 6.0809 1.8954 -4.8252 34 1 8.6347 2.1372 -4.2670 35 1 8.8462 3.0842 -1.7824 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299619169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:18 Heat of formation + Delta-G solvation = 65.087319 kcal Electronic energy + Delta-G solvation = -17399.924191 eV Core-core repulsion = 14629.410898 eV Total energy + Delta-G solvation = -2770.513293 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91876 -37.62045 -35.32623 -32.93559 -31.33669 -30.08222 -29.63377 -28.15419 -25.47889 -23.40349 -21.73837 -20.92807 -20.34542 -20.12031 -17.33459 -16.65209 -15.74064 -15.40507 -14.96867 -14.59954 -14.06130 -13.60409 -13.54886 -13.14726 -13.01649 -12.65647 -11.97965 -11.81845 -11.65216 -11.18552 -10.90805 -10.71368 -10.61606 -10.45324 -10.30874 -9.97485 -9.86482 -9.62977 -9.41903 -9.15038 -8.42204 -8.26214 -6.75983 -5.57769 -3.09003 2.10937 2.71017 3.02566 3.40583 3.47798 3.49392 4.47443 4.58707 4.81377 4.93928 5.12328 5.21311 5.41797 5.54228 5.60809 5.75213 5.88551 5.94006 5.97173 6.12805 6.45964 6.66781 6.68995 6.83666 7.04031 7.12955 7.19531 7.30361 7.70150 7.90542 8.00295 8.14268 8.15580 8.54006 9.32161 9.91636 10.33594 11.33050 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.006249 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.542081 B = 4479.474022 C = 5056.874053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.169 3.831 3 N -0.591 5.591 4 C -0.241 4.241 5 H 0.072 0.928 6 C -0.007 4.007 7 N -0.905 5.905 8 Si 0.907 3.093 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.127 3.873 13 C 0.072 3.928 14 H 0.111 0.889 15 O -0.544 6.544 16 C 0.097 3.903 17 N -0.354 5.354 18 C 0.049 3.951 19 C -0.283 4.283 20 C 0.034 3.966 21 N -0.285 5.285 22 H 0.078 0.922 23 H -0.003 1.003 24 H 0.021 0.979 25 H -0.003 1.003 26 H 0.105 0.895 27 H 0.248 0.752 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.357 0.643 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 2.694 -13.047 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 N -0.312 5.312 4 C -0.371 4.371 5 H 0.090 0.910 6 C -0.202 4.202 7 N -0.553 5.553 8 Si 0.737 3.263 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.219 1.219 12 C -0.002 4.002 13 C 0.009 3.991 14 H 0.128 0.872 15 O -0.347 6.347 16 C -0.026 4.026 17 N -0.136 5.136 18 C -0.098 4.098 19 C -0.313 4.313 20 C -0.152 4.152 21 N -0.107 5.107 22 H 0.097 0.903 23 H 0.016 0.984 24 H 0.040 0.960 25 H 0.016 0.984 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.202 0.798 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.185 0.815 34 H 0.159 0.841 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.102 3.105 -11.316 13.226 hybrid contribution 0.085 0.171 -0.508 0.542 sum 6.187 3.276 -11.824 13.741 Atomic orbital electron populations 1.22351 0.99662 0.98940 0.98334 1.21043 0.91862 0.83988 0.98636 1.44032 1.74551 1.11519 1.01077 1.19334 1.28192 1.02772 0.86759 0.90973 1.24834 1.00154 0.96952 0.98278 1.70207 1.44418 1.14054 1.26653 0.86123 0.77226 0.79657 0.83251 1.20569 1.21729 1.21877 1.21291 0.91002 0.97731 0.90217 1.23373 0.99597 0.80860 0.95317 0.87170 1.86728 1.72361 1.24153 1.51422 1.22733 0.74423 1.03362 1.02050 1.48726 1.06479 1.48392 1.09994 1.22497 0.92831 1.01157 0.93298 1.21411 0.95922 1.15269 0.98679 1.23820 0.96182 1.00271 0.94910 1.77400 0.98569 1.21758 1.12950 0.90319 0.98392 0.96019 0.98429 0.87771 0.94073 0.93061 0.93693 0.79807 0.88926 0.89145 0.81491 0.84073 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.30 37.16 0.35 -2.82 16 2 C 0.17 4.16 5.68 -4.04 -0.02 4.14 16 3 N -0.59 -14.48 2.52 -173.24 -0.44 -14.91 16 4 C -0.24 -6.55 9.75 -15.06 -0.15 -6.70 16 5 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 6 C -0.01 -0.18 5.07 -17.43 -0.09 -0.27 16 7 N -0.91 -25.54 7.51 55.49 0.42 -25.12 16 8 Si 0.91 22.05 29.56 -169.99 -5.03 17.02 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 C 0.13 2.42 5.28 -4.05 -0.02 2.40 16 13 C 0.07 1.27 3.29 -26.73 -0.09 1.18 16 14 H 0.11 2.42 8.06 -51.93 -0.42 2.00 16 15 O -0.54 -10.10 13.07 -35.23 -0.46 -10.56 16 16 C 0.10 1.30 6.15 -4.04 -0.02 1.27 16 17 N -0.35 -5.31 3.62 -61.36 -0.22 -5.53 16 18 C 0.05 0.61 11.45 -17.22 -0.20 0.41 16 19 C -0.28 -3.50 10.80 -40.01 -0.43 -3.94 16 20 C 0.03 0.48 12.03 -17.36 -0.21 0.27 16 21 N -0.28 -4.92 12.35 30.62 0.38 -4.54 16 22 H 0.08 2.11 6.13 -51.93 -0.32 1.79 16 23 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 26 H 0.10 2.94 5.85 -51.93 -0.30 2.64 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 30 H 0.36 5.08 9.05 45.56 0.41 5.49 16 31 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 294.62 15.07 4.44 4.44 Total: -1.00 -32.30 294.62 -6.17 -38.47 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.37 Total: 4.78 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.88 Total: -4.05 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.14 Total: -50.10 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.46 Total: -10.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.30 -6.17 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299619169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.556 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds