Wall clock time and date at job start Sun Mar 29 2020 22:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46918 * 2 1 4 4 C 1.36929 * 120.00370 * 83.20588 * 3 2 1 5 5 H 1.08001 * 120.00415 * 168.47066 * 4 3 2 6 6 C 1.38821 * 119.99945 * 348.47720 * 4 3 2 7 7 N 1.31620 * 119.99908 * 8.68839 * 6 4 3 8 8 Si 1.86803 * 119.99747 * 188.68845 * 6 4 3 9 9 H 1.48501 * 109.47075 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46780 * 120.00089 * 8 6 4 11 11 H 1.48500 * 109.46843 * 239.99696 * 8 6 4 12 12 C 1.46494 * 119.99536 * 263.20529 * 3 2 1 13 13 C 1.52999 * 109.47427 * 264.39334 * 12 3 2 14 14 H 1.08998 * 109.47190 * 306.23027 * 13 12 3 15 15 O 1.42902 * 109.47206 * 66.22638 * 13 12 3 16 16 C 1.53005 * 109.47590 * 186.22564 * 13 12 3 17 17 N 1.46502 * 109.47160 * 174.99595 * 16 13 12 18 18 C 1.34949 * 126.03253 * 124.99976 * 17 16 13 19 19 C 1.35320 * 107.74211 * 179.97438 * 18 17 16 20 20 C 1.39871 * 107.92131 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.19883 * 359.74150 * 20 19 18 22 22 H 1.09003 * 109.47375 * 307.32046 * 1 2 3 23 23 H 1.09002 * 109.47419 * 67.32196 * 1 2 3 24 24 H 1.09002 * 109.47397 * 187.32232 * 1 2 3 25 25 H 1.08995 * 109.47218 * 239.99554 * 2 1 3 26 26 H 1.08997 * 109.46926 * 119.99720 * 2 1 3 27 27 H 0.96994 * 119.99595 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47594 * 144.39093 * 12 3 2 29 29 H 1.09001 * 109.47597 * 24.39002 * 12 3 2 30 30 H 0.96700 * 114.00174 * 60.00495 * 15 13 12 31 31 H 1.08990 * 109.47118 * 295.00010 * 16 13 12 32 32 H 1.09003 * 109.46603 * 54.99738 * 16 13 12 33 33 H 1.07994 * 126.12959 * 0.02562 * 18 17 16 34 34 H 1.08000 * 126.03623 * 180.02562 * 19 18 17 35 35 H 1.07998 * 125.89636 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1143 2.0736 1.1775 5 1 2.6427 3.0149 1.2090 6 6 1.5324 1.5654 2.3308 7 7 1.0387 0.3453 2.3363 8 14 1.4499 2.6134 3.8751 9 1 2.0707 3.9360 3.6094 10 1 0.0309 2.8022 4.2699 11 1 2.1832 1.9345 4.9736 12 6 2.4039 2.0217 -1.2598 13 6 3.9150 1.8875 -1.4587 14 1 4.4327 2.2718 -0.5798 15 8 4.2505 0.5109 -1.6450 16 6 4.3403 2.6874 -2.6916 17 7 5.8000 2.6573 -2.8136 18 6 6.4980 2.2534 -3.8956 19 6 7.8142 2.3784 -3.6075 20 6 7.9243 2.8752 -2.3046 21 7 6.7174 3.0477 -1.8297 22 1 -0.3634 0.6230 0.8173 23 1 -0.3634 0.3962 -0.9482 24 1 -0.3634 -1.0193 0.1310 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.6325 -0.0098 3.1423 28 1 2.1340 3.0773 -1.2284 29 1 1.8843 1.5384 -2.0872 30 1 3.8246 0.1025 -2.4111 31 1 3.8921 2.2476 -3.5825 32 1 4.0055 3.7196 -2.5882 33 1 6.0809 1.8954 -4.8252 34 1 8.6347 2.1372 -4.2670 35 1 8.8462 3.0842 -1.7824 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299619169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:18 Heat of formation + Delta-G solvation = 41.994343 kcal Electronic energy + Delta-G solvation = -17400.925577 eV Core-core repulsion = 14629.410898 eV Total energy + Delta-G solvation = -2771.514679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93478 -39.11970 -37.09732 -34.10085 -33.19755 -31.62610 -30.91399 -29.67276 -27.04037 -25.15464 -23.22640 -22.13753 -21.72531 -21.46301 -18.85208 -18.17941 -17.09819 -16.79847 -16.70445 -15.93234 -15.46857 -15.31670 -14.84838 -14.58901 -14.29825 -13.78083 -13.58539 -13.42224 -13.11476 -12.93884 -12.76093 -12.46790 -12.36443 -12.07739 -11.79541 -11.63576 -11.50036 -11.40522 -11.17885 -10.36284 -10.23424 -9.41379 -8.67601 -7.64749 -5.15258 1.11503 1.44827 1.47049 1.55456 1.73304 2.04773 2.52244 3.32815 3.46332 3.55770 3.85471 4.09101 4.12148 4.23319 4.40271 4.51808 4.53673 4.78844 4.79523 4.95704 4.97755 5.14095 5.19858 5.24258 5.30175 5.39199 5.58873 5.83507 5.97835 6.18898 6.27053 6.50419 6.87592 6.98300 7.26741 7.98636 8.33809 9.23707 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.006249 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.542081 B = 4479.474022 C = 5056.874053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.174 3.826 3 N -0.609 5.609 4 C -0.248 4.248 5 H 0.067 0.933 6 C -0.057 4.057 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.298 1.298 12 C 0.125 3.875 13 C 0.089 3.911 14 H 0.058 0.942 15 O -0.568 6.568 16 C 0.104 3.896 17 N -0.369 5.369 18 C 0.054 3.946 19 C -0.291 4.291 20 C 0.025 3.975 21 N -0.349 5.349 22 H 0.044 0.956 23 H 0.018 0.982 24 H 0.028 0.972 25 H 0.022 0.978 26 H 0.063 0.937 27 H 0.241 0.759 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.378 0.622 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.211 0.789 34 H 0.169 0.831 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 2.893 -15.690 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 N -0.330 5.330 4 C -0.378 4.378 5 H 0.085 0.915 6 C -0.251 4.251 7 N -0.572 5.572 8 Si 0.791 3.209 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.226 1.226 12 C -0.003 4.003 13 C 0.026 3.974 14 H 0.076 0.924 15 O -0.374 6.374 16 C -0.017 4.017 17 N -0.151 5.151 18 C -0.092 4.092 19 C -0.320 4.320 20 C -0.160 4.160 21 N -0.172 5.172 22 H 0.063 0.937 23 H 0.037 0.963 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.226 0.774 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.227 0.773 34 H 0.187 0.813 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.378 3.321 -14.004 15.742 hybrid contribution 0.097 0.084 0.220 0.255 sum 6.475 3.405 -13.783 15.605 Atomic orbital electron populations 1.22131 0.99033 0.98756 0.97975 1.20803 0.92319 0.84203 0.97752 1.44191 1.75120 1.11564 1.02151 1.19532 1.27448 1.02636 0.88193 0.91547 1.25464 1.00856 0.98014 1.00718 1.70420 1.45216 1.14917 1.26644 0.85275 0.76863 0.78536 0.80236 1.19923 1.21677 1.22592 1.21518 0.92002 0.97940 0.88839 1.22829 0.97648 0.81198 0.95747 0.92429 1.86676 1.72969 1.24739 1.52988 1.22654 0.74362 1.03184 1.01522 1.48795 1.06671 1.49154 1.10448 1.23253 0.92782 0.99399 0.93775 1.21839 0.97111 1.14804 0.98229 1.24348 0.96153 0.99476 0.96026 1.77342 1.00149 1.24403 1.15291 0.93694 0.96269 0.95307 0.96026 0.91874 0.94857 0.92550 0.90492 0.77434 0.84278 0.88602 0.77253 0.81321 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 9.30 71.98 0.67 -4.90 16 2 C 0.17 8.48 5.68 86.38 0.49 8.97 16 3 N -0.61 -29.62 2.52 -702.01 -1.77 -31.39 16 4 C -0.25 -13.65 9.75 84.04 0.82 -12.83 16 5 H 0.07 3.64 7.84 -2.91 -0.02 3.62 16 6 C -0.06 -3.20 5.07 84.86 0.43 -2.77 16 7 N -0.92 -53.32 7.51 21.65 0.16 -53.16 16 8 Si 0.96 46.29 29.56 68.60 2.03 48.32 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 C 0.12 4.52 5.28 86.38 0.46 4.97 16 13 C 0.09 3.04 3.29 30.60 0.10 3.14 16 14 H 0.06 2.61 8.06 -2.39 -0.02 2.59 16 15 O -0.57 -20.17 13.07 -148.98 -1.95 -22.12 16 16 C 0.10 2.52 6.15 86.38 0.53 3.05 16 17 N -0.37 -10.29 3.62 -348.06 -1.26 -11.55 16 18 C 0.05 1.15 11.45 83.54 0.96 2.11 16 19 C -0.29 -6.40 10.80 21.99 0.24 -6.16 16 20 C 0.02 0.68 12.03 85.24 1.03 1.71 16 21 N -0.35 -11.99 12.35 -57.02 -0.70 -12.69 16 22 H 0.04 2.40 6.13 -2.39 -0.01 2.39 16 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.02 0.93 7.84 -2.39 -0.02 0.91 16 26 H 0.06 3.63 5.85 -2.39 -0.01 3.62 16 27 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.06 1.98 8.08 -2.39 -0.02 1.97 16 29 H 0.08 2.30 8.03 -2.39 -0.02 2.28 16 30 H 0.38 9.54 9.05 -74.06 -0.67 8.87 16 31 H 0.14 2.04 8.07 -2.39 -0.02 2.02 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.21 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.20 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -72.56 294.62 2.63 -69.93 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.40 Total: 15.38 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.72 Total: -2.72 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.57 Total: -108.79 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.95 Total: -22.12 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.56 2.63 -69.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299619169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.926 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds