Wall clock time and date at job start Sun Mar 29 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99652 * 2 1 4 4 H 1.08002 * 119.99695 * 159.15356 * 3 2 1 5 5 C 1.38814 * 120.00203 * 339.42517 * 3 2 1 6 6 N 1.31622 * 119.99766 * 347.70754 * 5 3 2 7 7 Si 1.86799 * 120.00051 * 167.70590 * 5 3 2 8 8 H 1.48494 * 109.47085 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46948 * 120.00006 * 7 5 3 10 10 H 1.48498 * 109.46943 * 240.00000 * 7 5 3 11 11 C 1.46493 * 120.00450 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46999 * 269.99930 * 11 2 1 13 13 N 1.29950 * 126.29059 * 90.02567 * 12 11 2 14 14 O 1.21293 * 110.25413 * 179.97438 * 13 12 11 15 15 C 1.33647 * 109.81239 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.55217 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46707 * 240.02750 * 16 15 14 18 18 C 1.53000 * 109.46842 * 0.02562 * 16 15 14 19 19 C 1.52991 * 109.46908 * 120.02653 * 16 15 14 20 20 N 1.31134 * 106.89416 * 359.77233 * 15 14 13 21 21 H 1.09000 * 109.47250 * 84.89593 * 1 2 3 22 22 H 1.09001 * 109.46544 * 204.89893 * 1 2 3 23 23 H 1.09002 * 109.47318 * 324.89194 * 1 2 3 24 24 H 0.96997 * 120.00108 * 180.02562 * 6 5 3 25 25 H 1.09006 * 109.46974 * 29.99273 * 11 2 1 26 26 H 1.08990 * 109.47502 * 149.99624 * 11 2 1 27 27 H 1.09000 * 109.47126 * 59.99957 * 17 16 15 28 28 H 1.09003 * 109.46703 * 180.02562 * 17 16 15 29 29 H 1.08993 * 109.47125 * 299.99838 * 17 16 15 30 30 H 1.08999 * 109.46805 * 60.00441 * 18 16 15 31 31 H 1.09003 * 109.46649 * 179.97438 * 18 16 15 32 32 H 1.08995 * 109.47341 * 299.99912 * 18 16 15 33 33 H 1.09006 * 109.47428 * 60.00132 * 19 16 15 34 34 H 1.09003 * 109.47105 * 179.97438 * 19 16 15 35 35 H 1.08999 * 109.47548 * 300.00054 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1767 1.2166 0.3329 5 6 1.5220 2.3498 -0.4225 6 7 0.3645 2.2842 -1.0457 7 14 2.3200 4.0089 -0.1065 8 1 3.6074 3.8112 0.6065 9 1 2.5703 4.6923 -1.4009 10 1 1.4162 4.8422 0.7266 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7042 1.4201 13 7 1.6702 -2.4507 2.1448 14 8 2.1548 -2.6204 3.2436 15 6 3.3245 -1.9793 3.3268 16 6 4.2427 -1.9384 4.5210 17 6 4.4242 -0.4887 4.9753 18 6 3.6337 -2.7576 5.6608 19 6 5.6022 -2.5274 4.1395 20 7 3.5231 -1.3971 2.1687 21 1 -0.3634 0.0914 -1.0236 22 1 -0.3632 -0.9322 0.4327 23 1 -0.3634 0.8407 0.5910 24 1 -0.0740 3.0974 -1.3412 25 1 1.6085 -2.0281 -0.5147 26 1 3.1499 -1.1381 -0.5143 27 1 3.4556 -0.0691 5.2471 28 1 5.0887 -0.4591 5.8389 29 1 4.8580 0.0948 4.1634 30 1 3.5044 -3.7903 5.3371 31 1 4.2981 -2.7284 6.5244 32 1 2.6652 -2.3380 5.9326 33 1 6.0361 -1.9438 3.3274 34 1 6.2665 -2.4974 5.0031 35 1 5.4728 -3.5602 3.8158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299703670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:17 Heat of formation + Delta-G solvation = 79.618989 kcal Electronic energy + Delta-G solvation = -17515.455331 eV Core-core repulsion = 14745.572179 eV Total energy + Delta-G solvation = -2769.883152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.93964 -37.32552 -36.15527 -34.53255 -31.68971 -30.65399 -27.65563 -27.39454 -26.89464 -25.81190 -23.77029 -22.64281 -21.05027 -19.35215 -17.52178 -16.84828 -16.65214 -15.35533 -14.90335 -14.20865 -14.17965 -13.72239 -13.54661 -13.25238 -12.53908 -12.47802 -12.15894 -11.79078 -11.77976 -11.52517 -11.32509 -11.25902 -11.03886 -10.98284 -10.79455 -10.68200 -10.44290 -10.27721 -9.98292 -9.92164 -9.28275 -8.59514 -6.92244 -5.75736 -3.22710 1.73525 2.94090 3.20062 3.37453 3.44539 3.48344 4.13784 4.49813 4.72319 4.73500 4.80379 4.98015 5.41286 5.44525 5.49182 5.51362 5.61835 5.62584 5.71720 5.76732 5.86168 5.98743 6.14477 6.21520 6.25370 6.44515 6.52506 6.69636 6.78157 7.38109 7.70042 7.83819 8.32795 8.85408 9.19115 9.79104 10.25969 11.29693 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.007090 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.609774 B = 3948.244483 C = 4565.170522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.585 5.585 3 C -0.257 4.257 4 H 0.075 0.925 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.907 3.093 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.229 3.771 12 C 0.174 3.826 13 N -0.397 5.397 14 O 0.062 5.938 15 C 0.161 3.839 16 C 0.034 3.966 17 C -0.140 4.140 18 C -0.147 4.147 19 C -0.138 4.138 20 N -0.464 5.464 21 H 0.036 0.964 22 H 0.000 1.000 23 H 0.045 0.955 24 H 0.253 0.747 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -9.377 11.741 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.386 4.386 4 H 0.093 0.907 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.737 3.263 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.097 3.903 12 C -0.103 4.103 13 N -0.107 5.107 14 O 0.007 5.993 15 C -0.060 4.060 16 C 0.031 3.969 17 C -0.198 4.198 18 C -0.205 4.205 19 C -0.196 4.196 20 N -0.197 5.197 21 H 0.055 0.945 22 H 0.019 0.981 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.201 -9.286 11.044 16.126 hybrid contribution 0.231 1.027 0.358 1.112 sum 7.432 -8.259 11.402 15.920 Atomic orbital electron populations 1.20903 0.81844 0.95840 0.99793 1.43959 1.02184 1.00086 1.84399 1.19345 0.97182 0.84757 1.37301 0.90714 1.25003 0.97462 0.98515 0.98516 1.70108 1.17259 1.26848 1.41059 0.86131 0.78702 0.83888 0.77563 1.20137 1.21538 1.21630 1.19166 0.98214 0.89404 0.83484 1.28111 0.85900 0.93042 1.03216 1.74580 1.21732 1.21628 0.92810 1.85212 1.30042 1.55942 1.28097 1.28679 0.87763 0.92593 0.97003 1.19092 0.91792 0.98520 0.87448 1.21905 1.02747 0.93092 1.02095 1.21932 1.01514 1.00046 0.96998 1.21885 0.93961 1.01134 1.02608 1.71853 1.24836 1.21537 1.01524 0.94523 0.98137 0.93628 0.93706 0.91495 0.90077 0.92054 0.91059 0.90905 0.91707 0.90985 0.91618 0.91034 0.91025 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.96 59.85 0.54 4.73 16 2 N -0.58 -15.49 2.91 -182.50 -0.53 -16.03 16 3 C -0.26 -7.31 9.69 -15.06 -0.15 -7.45 16 4 H 0.08 2.13 7.86 -52.49 -0.41 1.71 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -26.94 10.53 55.49 0.58 -26.35 16 7 Si 0.91 22.41 29.57 -169.99 -5.03 17.38 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 C 0.23 5.12 6.27 -5.20 -0.03 5.09 16 12 C 0.17 3.76 7.80 -156.37 -1.22 2.54 16 13 N -0.40 -8.29 12.16 30.90 0.38 -7.91 16 14 O 0.06 1.13 10.77 18.09 0.19 1.33 16 15 C 0.16 2.71 6.60 -13.05 -0.09 2.62 16 16 C 0.03 0.40 0.99 -155.66 -0.15 0.24 16 17 C -0.14 -1.61 8.46 37.16 0.31 -1.29 16 18 C -0.15 -1.36 8.07 37.16 0.30 -1.06 16 19 C -0.14 -1.37 8.46 37.15 0.31 -1.06 16 20 N -0.46 -9.35 11.55 -9.87 -0.11 -9.47 16 21 H 0.04 1.00 7.41 -51.93 -0.38 0.61 16 22 H 0.00 0.00 8.03 -51.93 -0.42 -0.42 16 23 H 0.04 1.28 7.15 -51.93 -0.37 0.91 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 26 H 0.08 1.75 8.04 -51.93 -0.42 1.33 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -32.16 297.37 -5.66 -37.82 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -5.36 Total: -5.62 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.26 Total: 4.36 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.31 Total: -59.76 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.19 Total: 1.33 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.16 -5.66 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299703670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.442 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds