Wall clock time and date at job start Sun Mar 29 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99652 * 2 1 4 4 H 1.08002 * 119.99695 * 159.15356 * 3 2 1 5 5 C 1.38814 * 120.00203 * 339.42517 * 3 2 1 6 6 N 1.31622 * 119.99766 * 347.70754 * 5 3 2 7 7 Si 1.86799 * 120.00051 * 167.70590 * 5 3 2 8 8 H 1.48494 * 109.47085 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46948 * 120.00006 * 7 5 3 10 10 H 1.48498 * 109.46943 * 240.00000 * 7 5 3 11 11 C 1.46493 * 120.00450 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.46999 * 269.99930 * 11 2 1 13 13 N 1.29950 * 126.29059 * 90.02567 * 12 11 2 14 14 O 1.21293 * 110.25413 * 179.97438 * 13 12 11 15 15 C 1.33647 * 109.81239 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.55217 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46707 * 240.02750 * 16 15 14 18 18 C 1.53000 * 109.46842 * 0.02562 * 16 15 14 19 19 C 1.52991 * 109.46908 * 120.02653 * 16 15 14 20 20 N 1.31134 * 106.89416 * 359.77233 * 15 14 13 21 21 H 1.09000 * 109.47250 * 84.89593 * 1 2 3 22 22 H 1.09001 * 109.46544 * 204.89893 * 1 2 3 23 23 H 1.09002 * 109.47318 * 324.89194 * 1 2 3 24 24 H 0.96997 * 120.00108 * 180.02562 * 6 5 3 25 25 H 1.09006 * 109.46974 * 29.99273 * 11 2 1 26 26 H 1.08990 * 109.47502 * 149.99624 * 11 2 1 27 27 H 1.09000 * 109.47126 * 59.99957 * 17 16 15 28 28 H 1.09003 * 109.46703 * 180.02562 * 17 16 15 29 29 H 1.08993 * 109.47125 * 299.99838 * 17 16 15 30 30 H 1.08999 * 109.46805 * 60.00441 * 18 16 15 31 31 H 1.09003 * 109.46649 * 179.97438 * 18 16 15 32 32 H 1.08995 * 109.47341 * 299.99912 * 18 16 15 33 33 H 1.09006 * 109.47428 * 60.00132 * 19 16 15 34 34 H 1.09003 * 109.47105 * 179.97438 * 19 16 15 35 35 H 1.08999 * 109.47548 * 300.00054 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1767 1.2166 0.3329 5 6 1.5220 2.3498 -0.4225 6 7 0.3645 2.2842 -1.0457 7 14 2.3200 4.0089 -0.1065 8 1 3.6074 3.8112 0.6065 9 1 2.5703 4.6923 -1.4009 10 1 1.4162 4.8422 0.7266 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7042 1.4201 13 7 1.6702 -2.4507 2.1448 14 8 2.1548 -2.6204 3.2436 15 6 3.3245 -1.9793 3.3268 16 6 4.2427 -1.9384 4.5210 17 6 4.4242 -0.4887 4.9753 18 6 3.6337 -2.7576 5.6608 19 6 5.6022 -2.5274 4.1395 20 7 3.5231 -1.3971 2.1687 21 1 -0.3634 0.0914 -1.0236 22 1 -0.3632 -0.9322 0.4327 23 1 -0.3634 0.8407 0.5910 24 1 -0.0740 3.0974 -1.3412 25 1 1.6085 -2.0281 -0.5147 26 1 3.1499 -1.1381 -0.5143 27 1 3.4556 -0.0691 5.2471 28 1 5.0887 -0.4591 5.8389 29 1 4.8580 0.0948 4.1634 30 1 3.5044 -3.7903 5.3371 31 1 4.2981 -2.7284 6.5244 32 1 2.6652 -2.3380 5.9326 33 1 6.0361 -1.9438 3.3274 34 1 6.2665 -2.4974 5.0031 35 1 5.4728 -3.5602 3.8158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299703670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:16 Heat of formation + Delta-G solvation = 58.093605 kcal Electronic energy + Delta-G solvation = -17516.388742 eV Core-core repulsion = 14745.572179 eV Total energy + Delta-G solvation = -2770.816563 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.48823 -38.31770 -38.03551 -36.23602 -33.57400 -32.37855 -29.09725 -28.23766 -28.17627 -27.89871 -25.18311 -24.36363 -22.82413 -20.65450 -19.09553 -18.75062 -18.26109 -16.99397 -16.52699 -15.64142 -15.51428 -15.26885 -15.03465 -14.93733 -13.87232 -13.64202 -13.33243 -13.29470 -12.97920 -12.96988 -12.73746 -12.62345 -12.61705 -12.49725 -12.35642 -12.12480 -12.03948 -11.91609 -11.87642 -11.82915 -10.85031 -10.72263 -9.05327 -7.92902 -5.43261 0.29067 1.32799 1.42232 1.43280 1.54972 1.93156 2.45240 2.78949 3.14783 3.31254 3.62822 3.84732 3.87559 3.89652 4.26420 4.51777 4.66271 4.69918 4.74644 4.75972 4.79609 4.84054 4.95422 4.95926 5.06274 5.15633 5.22408 5.25878 5.33961 5.41954 5.52458 5.60599 6.19327 7.02236 7.34106 7.68168 8.12262 9.11676 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.007090 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.609774 B = 3948.244483 C = 4565.170522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.266 4.266 4 H 0.070 0.930 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.972 3.028 8 H -0.269 1.269 9 H -0.284 1.284 10 H -0.290 1.290 11 C 0.231 3.769 12 C 0.157 3.843 13 N -0.411 5.411 14 O 0.070 5.930 15 C 0.178 3.822 16 C 0.030 3.970 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.134 4.134 20 N -0.494 5.494 21 H 0.019 0.981 22 H 0.020 0.980 23 H 0.017 0.983 24 H 0.251 0.749 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.455 -9.904 13.812 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.325 5.325 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.244 4.244 6 N -0.583 5.583 7 Si 0.800 3.200 8 H -0.193 1.193 9 H -0.210 1.210 10 H -0.216 1.216 11 C 0.101 3.899 12 C -0.119 4.119 13 N -0.121 5.121 14 O 0.013 5.987 15 C -0.043 4.043 16 C 0.028 3.972 17 C -0.197 4.197 18 C -0.201 4.201 19 C -0.192 4.192 20 N -0.227 5.227 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.788 -9.842 13.114 18.602 hybrid contribution -0.198 1.095 -0.195 1.129 sum 8.590 -8.747 12.918 17.809 Atomic orbital electron populations 1.20589 0.82118 0.95512 0.98276 1.44096 1.02293 1.01033 1.85038 1.19514 0.97144 0.85913 1.36960 0.91264 1.25791 0.98192 1.01807 0.98561 1.70247 1.18495 1.27501 1.42015 0.85130 0.77966 0.79499 0.77426 1.19305 1.21031 1.21636 1.19199 0.98154 0.88204 0.84365 1.27704 0.86939 0.94235 1.03024 1.74538 1.22158 1.21863 0.93571 1.85175 1.30585 1.55945 1.26979 1.29809 0.87057 0.90020 0.97427 1.19580 0.91789 0.99561 0.86275 1.21933 1.02800 0.92218 1.02712 1.21964 1.01797 0.99435 0.96925 1.21903 0.93094 1.00612 1.03563 1.71824 1.24957 1.23050 1.02884 0.96244 0.96197 0.96388 0.93925 0.89960 0.89841 0.93284 0.87070 0.93332 0.91389 0.87519 0.92356 0.92972 0.87361 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.58 8.96 127.77 1.15 10.72 16 2 N -0.60 -32.34 2.91 -731.31 -2.13 -34.47 16 3 C -0.27 -15.31 9.69 84.03 0.81 -14.49 16 4 H 0.07 3.99 7.86 -2.91 -0.02 3.96 16 5 C -0.05 -2.79 5.12 84.86 0.43 -2.36 16 6 N -0.94 -56.49 10.53 21.65 0.23 -56.26 16 7 Si 0.97 46.37 29.57 68.60 2.03 48.40 16 8 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 11 C 0.23 10.39 6.27 85.63 0.54 10.93 16 12 C 0.16 6.78 7.80 138.46 1.08 7.86 16 13 N -0.41 -16.99 12.16 -60.32 -0.73 -17.72 16 14 O 0.07 2.47 10.77 74.81 0.81 3.28 16 15 C 0.18 5.76 6.60 88.38 0.58 6.35 16 16 C 0.03 0.63 0.99 -52.93 -0.05 0.58 16 17 C -0.14 -2.85 8.46 71.98 0.61 -2.24 16 18 C -0.14 -2.13 8.07 71.98 0.58 -1.55 16 19 C -0.13 -2.27 8.46 71.98 0.61 -1.66 16 20 N -0.49 -19.82 11.55 -303.18 -3.50 -23.33 16 21 H 0.02 1.08 7.41 -2.39 -0.02 1.07 16 22 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 23 H 0.02 1.01 7.15 -2.39 -0.02 1.00 16 24 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.08 3.38 8.07 -2.38 -0.02 3.36 16 26 H 0.08 3.65 8.04 -2.39 -0.02 3.63 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.86 297.37 4.10 -65.76 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.06 Total: 0.20 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.34 Total: 14.14 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -6.14 Total: -131.77 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: 0.81 Total: 3.28 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -69.86 4.10 -65.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299703670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.857 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds