Wall clock time and date at job start Sun Mar 29 2020 22:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.50703 * 109.47126 * 89.99796 * 3 2 1 5 5 H 1.08002 * 119.99820 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00192 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 120.00045 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46980 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47015 * 119.99649 * 8 6 4 11 11 H 1.48496 * 109.47036 * 240.00093 * 8 6 4 12 12 C 1.38842 * 120.00125 * 179.72084 * 2 1 3 13 13 N 1.30627 * 126.38770 * 179.69211 * 12 2 1 14 14 O 1.21292 * 110.12759 * 179.80791 * 13 12 2 15 15 C 1.33650 * 109.97934 * 0.45922 * 14 13 12 16 16 C 1.50696 * 126.46529 * 179.73379 * 15 14 13 17 17 C 1.53003 * 109.47279 * 239.98304 * 16 15 14 18 18 C 1.53007 * 109.46871 * 359.97438 * 16 15 14 19 19 C 1.53002 * 109.47421 * 119.97671 * 16 15 14 20 20 N 1.31045 * 107.07511 * 359.71806 * 15 14 13 21 21 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 23 23 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 25 25 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 26 26 H 0.96995 * 119.99689 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47436 * 59.99432 * 17 16 15 28 28 H 1.08997 * 109.46958 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46795 * 299.99447 * 17 16 15 30 30 H 1.08998 * 109.47027 * 60.00209 * 18 16 15 31 31 H 1.08997 * 109.46745 * 179.97438 * 18 16 15 32 32 H 1.08999 * 109.47162 * 300.00150 * 18 16 15 33 33 H 1.09003 * 109.46373 * 60.00133 * 19 16 15 34 34 H 1.08996 * 109.47151 * 180.02562 * 19 16 15 35 35 H 1.09001 * 109.46945 * 300.00692 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5533 3.6182 0.6731 8 14 3.4366 3.4177 3.4340 9 1 2.8598 2.4171 4.3673 10 1 4.8991 3.5264 3.6677 11 1 2.7985 4.7382 3.6669 12 6 2.1593 -1.2024 0.0059 13 7 3.4574 -1.3477 0.0009 14 8 3.7456 -2.5259 0.0123 15 6 2.6340 -3.2678 0.0159 16 6 2.5618 -4.7730 0.0236 17 6 1.8168 -5.2544 -1.2231 18 6 3.9784 -5.3515 0.0262 19 6 1.8173 -5.2416 1.2754 20 7 1.6185 -2.4395 0.0118 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.1499 1.1384 -0.5138 25 1 1.6084 2.0284 -0.5138 26 1 4.0294 4.4444 0.8504 27 1 2.3473 -4.9205 -2.1149 28 1 1.7643 -6.3430 -1.2173 29 1 0.8077 -4.8423 -1.2250 30 1 4.5092 -5.0086 0.9143 31 1 3.9262 -6.4402 0.0322 32 1 4.5087 -5.0176 -0.8656 33 1 0.8082 -4.8295 1.2734 34 1 1.7655 -6.3304 1.2812 35 1 2.3481 -4.8987 2.1635 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302071820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:18 Heat of formation + Delta-G solvation = 65.737313 kcal Electronic energy + Delta-G solvation = -17372.501140 eV Core-core repulsion = 14602.016033 eV Total energy + Delta-G solvation = -2770.485107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.56356 -37.27757 -36.66210 -33.94475 -32.43087 -30.56506 -27.84916 -27.46830 -27.41078 -25.47819 -23.57418 -23.02970 -21.24517 -19.13372 -17.30265 -16.90731 -16.40325 -15.39685 -15.17581 -14.47883 -14.18970 -14.06424 -13.61186 -13.37242 -12.48934 -12.46857 -12.17591 -11.85228 -11.78856 -11.78675 -11.37674 -11.30469 -11.24956 -11.09673 -10.91271 -10.83849 -10.65769 -10.23545 -10.00370 -9.83674 -9.30127 -8.47188 -7.02394 -6.05027 -4.12644 1.94332 3.28187 3.29908 3.35844 3.38285 3.40853 3.56734 4.36699 4.42696 4.75947 4.83518 4.99110 5.26488 5.47835 5.49127 5.53076 5.66052 5.66529 5.72595 5.74158 5.92895 6.02529 6.10136 6.15846 6.17125 6.20455 6.34892 6.67028 7.01896 7.33640 7.81101 8.00940 8.19712 8.24986 8.91333 9.28416 9.53248 11.00464 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.034642 B = 0.006000 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.084265 B = 4665.555373 C = 4915.073653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.573 5.573 3 C 0.261 3.739 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.437 3.563 13 N -0.429 5.429 14 O 0.055 5.945 15 C 0.177 3.823 16 C 0.034 3.966 17 C -0.137 4.137 18 C -0.148 4.148 19 C -0.138 4.138 20 N -0.513 5.513 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.263 0.737 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 -17.435 -2.014 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.299 5.299 3 C 0.142 3.858 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.077 3.923 13 N -0.158 5.158 14 O 0.011 5.989 15 C -0.045 4.045 16 C 0.031 3.969 17 C -0.195 4.195 18 C -0.205 4.205 19 C -0.196 4.196 20 N -0.255 5.255 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.375 -16.386 -2.076 16.858 hybrid contribution 0.220 0.484 1.013 1.144 sum -3.155 -15.902 -1.063 16.246 Atomic orbital electron populations 1.21402 0.79136 1.02302 1.00012 1.45996 1.04685 1.00914 1.78311 1.19321 0.91936 0.77146 0.97372 1.21552 1.36468 1.06388 0.92443 0.92422 1.24938 0.95274 0.96270 0.97508 1.69942 1.38393 1.14324 1.30692 0.86435 0.78070 0.78369 0.84534 1.19845 1.20816 1.20840 1.22072 0.85890 0.87559 0.96731 1.74963 1.14181 0.93889 1.32802 1.85271 1.34132 1.11878 1.67595 1.28187 0.81765 0.97640 0.96928 1.19061 0.98153 0.81291 0.98348 1.21876 1.00938 1.01231 0.95494 1.21928 0.93982 1.01092 1.03522 1.21884 1.00980 1.01261 0.95501 1.71657 1.29683 0.98762 1.25412 0.94456 0.92198 0.91009 0.94392 0.94438 0.92693 0.92157 0.91137 0.91263 0.91512 0.91112 0.91546 0.91250 0.91142 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.20 10.60 59.85 0.63 2.83 16 2 N -0.57 -13.59 2.97 -186.57 -0.55 -14.14 16 3 C 0.26 7.10 5.31 -5.19 -0.03 7.07 16 4 C -0.53 -15.40 9.39 -34.44 -0.32 -15.72 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 7 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.44 10.16 8.33 -321.19 -2.68 7.48 16 13 N -0.43 -10.29 11.55 28.63 0.33 -9.96 16 14 O 0.05 1.09 10.75 18.09 0.19 1.29 16 15 C 0.18 3.00 6.59 -12.99 -0.09 2.91 16 16 C 0.03 0.39 0.99 -155.66 -0.15 0.23 16 17 C -0.14 -1.33 8.46 37.16 0.31 -1.02 16 18 C -0.15 -1.38 8.06 37.16 0.30 -1.08 16 19 C -0.14 -1.39 8.46 37.16 0.31 -1.08 16 20 N -0.51 -10.08 10.95 -12.68 -0.14 -10.22 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 23 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 24 H 0.04 1.13 7.69 -51.93 -0.40 0.73 16 25 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -32.93 301.07 -7.13 -40.06 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -5.41 Total: -5.99 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.80 Total: 3.33 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.37 Total: -60.40 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.19 Total: 1.29 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.93 -7.13 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302071820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.795 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds