Wall clock time and date at job start Sun Mar 29 2020 22:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.50703 * 109.47126 * 89.99796 * 3 2 1 5 5 H 1.08002 * 119.99820 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00192 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 120.00045 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46980 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47015 * 119.99649 * 8 6 4 11 11 H 1.48496 * 109.47036 * 240.00093 * 8 6 4 12 12 C 1.38842 * 120.00125 * 179.72084 * 2 1 3 13 13 N 1.30627 * 126.38770 * 179.69211 * 12 2 1 14 14 O 1.21292 * 110.12759 * 179.80791 * 13 12 2 15 15 C 1.33650 * 109.97934 * 0.45922 * 14 13 12 16 16 C 1.50696 * 126.46529 * 179.73379 * 15 14 13 17 17 C 1.53003 * 109.47279 * 239.98304 * 16 15 14 18 18 C 1.53007 * 109.46871 * 359.97438 * 16 15 14 19 19 C 1.53002 * 109.47421 * 119.97671 * 16 15 14 20 20 N 1.31045 * 107.07511 * 359.71806 * 15 14 13 21 21 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 23 23 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 25 25 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 26 26 H 0.96995 * 119.99689 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47436 * 59.99432 * 17 16 15 28 28 H 1.08997 * 109.46958 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46795 * 299.99447 * 17 16 15 30 30 H 1.08998 * 109.47027 * 60.00209 * 18 16 15 31 31 H 1.08997 * 109.46745 * 179.97438 * 18 16 15 32 32 H 1.08999 * 109.47162 * 300.00150 * 18 16 15 33 33 H 1.09003 * 109.46373 * 60.00133 * 19 16 15 34 34 H 1.08996 * 109.47151 * 180.02562 * 19 16 15 35 35 H 1.09001 * 109.46945 * 300.00692 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6728 7 7 3.5533 3.6182 0.6731 8 14 3.4366 3.4177 3.4340 9 1 2.8598 2.4171 4.3673 10 1 4.8991 3.5264 3.6677 11 1 2.7985 4.7382 3.6669 12 6 2.1593 -1.2024 0.0059 13 7 3.4574 -1.3477 0.0009 14 8 3.7456 -2.5259 0.0123 15 6 2.6340 -3.2678 0.0159 16 6 2.5618 -4.7730 0.0236 17 6 1.8168 -5.2544 -1.2231 18 6 3.9784 -5.3515 0.0262 19 6 1.8173 -5.2416 1.2754 20 7 1.6185 -2.4395 0.0118 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.1499 1.1384 -0.5138 25 1 1.6084 2.0284 -0.5138 26 1 4.0294 4.4444 0.8504 27 1 2.3473 -4.9205 -2.1149 28 1 1.7643 -6.3430 -1.2173 29 1 0.8077 -4.8423 -1.2250 30 1 4.5092 -5.0086 0.9143 31 1 3.9262 -6.4402 0.0322 32 1 4.5087 -5.0176 -0.8656 33 1 0.8082 -4.8295 1.2734 34 1 1.7655 -6.3304 1.2812 35 1 2.3481 -4.8987 2.1635 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302071820.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:18 Heat of formation + Delta-G solvation = 45.278234 kcal Electronic energy + Delta-G solvation = -17373.388312 eV Core-core repulsion = 14602.016033 eV Total energy + Delta-G solvation = -2771.372279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.21039 -38.45832 -38.25899 -35.68236 -34.49484 -32.17180 -29.88882 -28.29963 -28.18839 -27.19780 -25.29790 -24.74266 -22.83282 -20.52106 -19.02523 -18.57413 -18.39991 -17.12276 -16.55599 -16.36026 -15.44826 -15.16103 -14.98301 -14.91845 -14.15345 -13.66212 -13.32877 -13.26918 -13.18107 -12.91298 -12.88564 -12.71202 -12.63602 -12.57968 -12.54700 -12.22669 -12.11443 -11.83329 -11.73476 -11.70708 -11.07036 -10.70222 -8.88200 -8.22753 -6.43759 0.47534 1.33057 1.34673 1.46638 1.61488 1.83784 2.12675 2.34375 3.00147 3.05894 3.82228 3.91905 3.94067 4.00237 4.41930 4.55302 4.60558 4.75513 4.79376 4.81476 4.88004 4.92420 4.99056 4.99447 5.05557 5.10063 5.14681 5.28542 5.38000 5.44572 5.57545 5.95903 6.15138 6.40145 6.67709 7.26338 7.68399 8.78980 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.034642 B = 0.006000 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.084265 B = 4665.555373 C = 4915.073653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.587 5.587 3 C 0.280 3.720 4 C -0.546 4.546 5 H 0.046 0.954 6 C 0.013 3.987 7 N -0.925 5.925 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.266 1.266 12 C 0.419 3.581 13 N -0.472 5.472 14 O 0.052 5.948 15 C 0.195 3.805 16 C 0.030 3.970 17 C -0.134 4.134 18 C -0.146 4.146 19 C -0.135 4.135 20 N -0.520 5.520 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.002 0.998 25 H 0.029 0.971 26 H 0.269 0.731 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 -19.550 -1.174 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.313 5.313 3 C 0.159 3.841 4 C -0.585 4.585 5 H 0.064 0.936 6 C -0.186 4.186 7 N -0.564 5.564 8 Si 0.792 3.208 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.191 1.191 12 C 0.059 3.941 13 N -0.204 5.204 14 O 0.009 5.991 15 C -0.026 4.026 16 C 0.028 3.972 17 C -0.192 4.192 18 C -0.203 4.203 19 C -0.193 4.193 20 N -0.261 5.261 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.020 0.980 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.826 -18.532 -1.246 18.964 hybrid contribution 0.355 1.001 0.701 1.273 sum -3.471 -17.531 -0.545 17.879 Atomic orbital electron populations 1.21558 0.76636 1.02904 1.01507 1.45924 1.06121 1.00213 1.79059 1.18816 0.90581 0.78615 0.96097 1.21704 1.37182 1.06784 0.92835 0.93586 1.25816 0.94650 0.96117 1.02035 1.70042 1.38681 1.14782 1.32941 0.85360 0.78077 0.78375 0.78938 1.19704 1.20285 1.19131 1.22351 0.86068 0.88444 0.97204 1.74943 1.15187 0.95974 1.34251 1.85201 1.34878 1.11034 1.67964 1.29569 0.80119 0.99680 0.93231 1.19603 1.00266 0.77194 1.00120 1.21903 0.99627 1.03591 0.94032 1.21972 0.92117 1.03335 1.02909 1.21915 0.99636 1.03693 0.94070 1.71675 1.30253 0.97601 1.26590 0.92434 0.90994 0.90907 0.97964 0.95303 0.92155 0.92727 0.87231 0.92513 0.92356 0.87322 0.92057 0.92552 0.87157 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.43 10.60 127.77 1.35 5.79 16 2 N -0.59 -28.56 2.97 -746.99 -2.22 -30.78 16 3 C 0.28 15.81 5.31 85.63 0.45 16.27 16 4 C -0.55 -32.55 9.39 25.60 0.24 -32.31 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.01 0.78 5.46 84.65 0.46 1.24 16 7 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 8 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.42 19.94 8.33 260.92 2.17 22.12 16 13 N -0.47 -23.44 11.55 -66.70 -0.77 -24.21 16 14 O 0.05 2.13 10.75 74.78 0.80 2.93 16 15 C 0.20 6.52 6.59 88.36 0.58 7.11 16 16 C 0.03 0.62 0.99 -52.92 -0.05 0.57 16 17 C -0.13 -2.20 8.46 71.98 0.61 -1.59 16 18 C -0.15 -2.31 8.06 71.98 0.58 -1.73 16 19 C -0.14 -2.34 8.46 71.98 0.61 -1.73 16 20 N -0.52 -20.46 10.95 -311.45 -3.41 -23.87 16 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.07 2.53 7.68 -2.39 -0.02 2.52 16 23 H 0.07 2.71 8.07 -2.39 -0.02 2.70 16 24 H 0.00 0.14 7.69 -2.39 -0.02 0.12 16 25 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 26 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.25 301.07 4.79 -68.47 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 1.06 Total: -0.02 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.01 Total: 15.73 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -6.11 Total: -134.85 kcal Atomic # 8 Polarization: 2.13 SS G_CDS: 0.80 Total: 2.93 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.25 4.79 -68.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302071820.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.744 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds