Wall clock time and date at job start Sun Mar 29 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 H 1.09001 * 109.47659 * 340.00004 * 5 4 3 7 7 C 1.52996 * 109.47067 * 100.00066 * 5 4 3 8 8 O 1.42896 * 109.47380 * 54.99893 * 7 5 4 9 9 N 1.46908 * 109.47217 * 220.00037 * 5 4 3 10 10 C 1.46897 * 111.00001 * 154.99979 * 9 5 4 11 11 C 1.52999 * 109.46882 * 179.97438 * 10 9 5 12 12 C 1.50700 * 109.47112 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00156 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99953 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46901 * 59.99726 * 16 14 12 18 18 H 1.48494 * 109.47356 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47147 * 299.99928 * 16 14 12 20 20 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 21 21 N 1.30837 * 108.19940 * 0.36269 * 20 4 3 22 22 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 23 23 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 24 24 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 25 25 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 26 26 H 1.09001 * 109.47343 * 174.99775 * 7 5 4 27 27 H 1.08999 * 109.47333 * 294.99654 * 7 5 4 28 28 H 0.96697 * 114.00677 * 179.97438 * 8 7 5 29 29 H 1.00897 * 110.99784 * 31.04516 * 9 5 4 30 30 H 1.08996 * 109.47147 * 299.99591 * 10 9 5 31 31 H 1.08996 * 109.46946 * 60.00389 * 10 9 5 32 32 H 1.09004 * 109.47207 * 300.00086 * 11 10 9 33 33 H 1.08999 * 109.47169 * 60.00063 * 11 10 9 34 34 H 0.96999 * 119.99440 * 180.02562 * 15 14 12 35 35 H 1.08001 * 125.90034 * 180.14354 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 1 4.4986 2.5411 -0.3633 7 6 5.3342 1.6416 1.4068 8 8 5.5788 0.3277 1.9123 9 7 5.7808 0.9674 -0.9048 10 6 6.6926 2.0038 -1.4071 11 6 7.7310 1.3650 -2.3314 12 6 8.6669 2.4281 -2.8463 13 1 8.5340 3.4566 -2.5447 14 6 9.6921 2.0879 -3.7031 15 7 9.8536 0.8355 -4.0707 16 14 10.8517 3.4058 -4.3418 17 1 11.5407 4.0554 -3.1980 18 1 11.8597 2.7858 -5.2389 19 1 10.0769 4.4237 -5.0959 20 6 3.5347 -0.7321 0.0008 21 7 2.2892 -1.1327 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9281 2.1194 -0.0010 26 1 6.2683 2.2032 1.3877 27 1 4.6172 2.1510 2.0506 28 1 5.9398 0.3121 2.8092 29 1 5.3477 0.4668 -1.6663 30 1 6.1238 2.7510 -1.9605 31 1 7.1984 2.4806 -0.5676 32 1 8.2998 0.6180 -1.7776 33 1 7.2255 0.8879 -3.1710 34 1 10.5751 0.5962 -4.6732 35 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308873231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:56 Heat of formation + Delta-G solvation = 27.561305 kcal Electronic energy + Delta-G solvation = -16738.979895 eV Core-core repulsion = 13966.839353 eV Total energy + Delta-G solvation = -2772.140543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.08716 -37.31379 -35.18124 -33.40489 -32.69496 -31.00624 -29.06951 -27.26783 -26.34272 -24.06710 -21.96117 -21.07425 -20.18556 -19.59465 -17.06855 -16.88082 -16.19710 -15.42630 -15.24845 -14.43198 -14.21982 -14.18807 -13.82074 -13.26692 -12.94583 -12.87017 -12.65920 -12.37785 -12.11158 -11.79348 -11.28829 -10.92042 -10.83546 -10.51140 -10.35326 -9.95444 -9.61570 -9.33513 -9.26396 -9.10098 -8.30012 -8.24314 -7.67569 -5.94521 -3.97110 1.97214 2.59691 3.02337 3.36133 3.40598 3.42667 4.43122 4.50254 4.62835 4.80642 4.91023 4.98522 5.16578 5.22626 5.41090 5.48604 5.57576 5.72413 5.84089 5.87783 6.07804 6.23775 6.40953 6.48722 6.86819 7.05340 7.06356 7.58905 7.80166 7.86532 7.90913 8.00807 8.08282 8.17923 8.49540 9.10316 9.66164 11.16844 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038383 B = 0.004477 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.316300 B = 6252.681068 C = 6470.850040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.385 5.385 3 C 0.046 3.954 4 C -0.222 4.222 5 C 0.163 3.837 6 H 0.053 0.947 7 C 0.096 3.904 8 O -0.551 6.551 9 N -0.674 5.674 10 C 0.066 3.934 11 C 0.026 3.974 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.093 3.907 21 N -0.311 5.311 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.168 0.832 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.365 0.635 29 H 0.339 0.661 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.961 1.625 10.793 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.168 5.168 3 C -0.100 4.100 4 C -0.234 4.234 5 C 0.052 3.948 6 H 0.071 0.929 7 C 0.017 3.983 8 O -0.353 6.353 9 N -0.305 5.305 10 C -0.063 4.063 11 C -0.011 4.011 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.094 4.094 21 N -0.132 5.132 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.185 0.815 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.210 0.790 29 H 0.157 0.843 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.628 0.152 10.591 20.565 hybrid contribution 0.818 2.190 -0.502 2.392 sum -16.810 2.342 10.089 19.744 Atomic orbital electron populations 1.21748 0.74816 1.04016 1.03012 1.48383 1.06289 1.04013 1.58091 1.22235 0.91034 0.93169 1.03556 1.20033 0.93350 0.94668 1.15369 1.19798 0.87626 0.94352 0.93033 0.92917 1.22120 0.97964 0.84479 0.93690 1.86607 1.86932 1.27568 1.34239 1.60570 1.19017 1.28170 1.22758 1.22219 0.94202 0.92099 0.97738 1.19047 0.92531 0.96191 0.93364 1.21149 1.12922 0.94221 1.27777 0.92891 1.25000 0.97633 0.95281 0.96428 1.69969 1.31923 1.16595 1.34698 0.86664 0.80681 0.81865 0.78789 1.20261 1.21299 1.20352 1.23794 0.94465 0.94690 0.96433 1.77376 1.02013 1.07935 1.25865 0.91108 0.89601 0.89920 0.81473 0.93559 0.94892 0.78979 0.84251 0.96870 0.92511 0.95535 0.96847 0.92970 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.79 11.47 59.85 0.69 1.48 16 2 N -0.39 -4.80 4.01 -68.16 -0.27 -5.08 16 3 C 0.05 0.56 11.40 -17.22 -0.20 0.37 16 4 C -0.22 -3.22 4.56 -105.06 -0.48 -3.69 16 5 C 0.16 2.47 2.84 -68.86 -0.20 2.27 16 6 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 7 C 0.10 1.33 6.79 37.16 0.25 1.58 16 8 O -0.55 -7.92 12.52 -35.23 -0.44 -8.36 16 9 N -0.67 -12.44 6.06 -107.95 -0.65 -13.09 16 10 C 0.07 1.39 5.42 -3.83 -0.02 1.37 16 11 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.09 1.45 10.76 -17.37 -0.19 1.26 16 21 N -0.31 -4.81 12.58 30.62 0.39 -4.43 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.37 3.63 9.12 45.56 0.42 4.05 16 29 H 0.34 6.35 8.16 -39.29 -0.32 6.03 16 30 H 0.01 0.27 8.05 -51.93 -0.42 -0.14 16 31 H 0.06 1.20 7.36 -51.93 -0.38 0.81 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.19 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -34.25 301.21 -5.84 -40.09 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.42 Total: 4.58 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.70 Total: -8.51 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.19 Total: -49.17 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.44 Total: -8.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.25 -5.84 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308873231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.652 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds