Wall clock time and date at job start Sun Mar 29 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 H 1.09001 * 109.47659 * 340.00004 * 5 4 3 7 7 C 1.52996 * 109.47067 * 100.00066 * 5 4 3 8 8 O 1.42896 * 109.47380 * 54.99893 * 7 5 4 9 9 N 1.46908 * 109.47217 * 220.00037 * 5 4 3 10 10 C 1.46897 * 111.00001 * 154.99979 * 9 5 4 11 11 C 1.52999 * 109.46882 * 179.97438 * 10 9 5 12 12 C 1.50700 * 109.47112 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00156 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99953 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46901 * 59.99726 * 16 14 12 18 18 H 1.48494 * 109.47356 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47147 * 299.99928 * 16 14 12 20 20 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 21 21 N 1.30837 * 108.19940 * 0.36269 * 20 4 3 22 22 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 23 23 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 24 24 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 25 25 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 26 26 H 1.09001 * 109.47343 * 174.99775 * 7 5 4 27 27 H 1.08999 * 109.47333 * 294.99654 * 7 5 4 28 28 H 0.96697 * 114.00677 * 179.97438 * 8 7 5 29 29 H 1.00897 * 110.99784 * 31.04516 * 9 5 4 30 30 H 1.08996 * 109.47147 * 299.99591 * 10 9 5 31 31 H 1.08996 * 109.46946 * 60.00389 * 10 9 5 32 32 H 1.09004 * 109.47207 * 300.00086 * 11 10 9 33 33 H 1.08999 * 109.47169 * 60.00063 * 11 10 9 34 34 H 0.96999 * 119.99440 * 180.02562 * 15 14 12 35 35 H 1.08001 * 125.90034 * 180.14354 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 1 4.4986 2.5411 -0.3633 7 6 5.3342 1.6416 1.4068 8 8 5.5788 0.3277 1.9123 9 7 5.7808 0.9674 -0.9048 10 6 6.6926 2.0038 -1.4071 11 6 7.7310 1.3650 -2.3314 12 6 8.6669 2.4281 -2.8463 13 1 8.5340 3.4566 -2.5447 14 6 9.6921 2.0879 -3.7031 15 7 9.8536 0.8355 -4.0707 16 14 10.8517 3.4058 -4.3418 17 1 11.5407 4.0554 -3.1980 18 1 11.8597 2.7858 -5.2389 19 1 10.0769 4.4237 -5.0959 20 6 3.5347 -0.7321 0.0008 21 7 2.2892 -1.1327 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9281 2.1194 -0.0010 26 1 6.2683 2.2032 1.3877 27 1 4.6172 2.1510 2.0506 28 1 5.9398 0.3121 2.8092 29 1 5.3477 0.4668 -1.6663 30 1 6.1238 2.7510 -1.9605 31 1 7.1984 2.4806 -0.5676 32 1 8.2998 0.6180 -1.7776 33 1 7.2255 0.8879 -3.1710 34 1 10.5751 0.5962 -4.6732 35 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308873231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:56 Heat of formation + Delta-G solvation = 0.012840 kcal Electronic energy + Delta-G solvation = -16740.174486 eV Core-core repulsion = 13966.839353 eV Total energy + Delta-G solvation = -2773.335134 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10485 -38.54223 -36.58686 -35.09894 -33.96947 -32.49091 -30.49302 -28.65692 -27.24055 -25.95389 -23.26154 -22.43798 -21.59839 -20.69593 -18.48175 -18.14298 -17.85113 -16.59254 -16.35015 -16.32376 -15.55374 -15.20913 -15.15886 -14.53249 -14.31591 -14.18612 -13.71542 -13.54815 -13.31215 -13.13365 -13.10953 -12.77700 -12.41108 -12.10185 -11.93173 -11.40983 -11.34906 -11.25735 -10.66134 -10.52743 -10.27173 -9.26774 -9.13896 -8.16827 -6.28767 0.99855 1.42016 1.45810 1.53646 1.77158 1.90499 2.43178 3.16359 3.35520 3.63426 3.75929 4.08797 4.27794 4.41854 4.46983 4.50245 4.54447 4.66793 4.70680 4.71869 4.76518 4.87314 5.02018 5.12787 5.19316 5.49430 5.72394 5.74854 5.83971 6.18759 6.22388 6.40310 6.59831 6.81916 6.89343 7.15167 7.40505 8.95281 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.038383 B = 0.004477 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.316300 B = 6252.681068 C = 6470.850040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.064 3.936 4 C -0.244 4.244 5 C 0.163 3.837 6 H 0.068 0.932 7 C 0.097 3.903 8 O -0.573 6.573 9 N -0.682 5.682 10 C 0.086 3.914 11 C 0.032 3.968 12 C -0.544 4.544 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.075 3.925 21 N -0.343 5.343 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.118 0.882 25 H 0.210 0.790 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.383 0.617 29 H 0.334 0.666 30 H 0.020 0.980 31 H 0.060 0.940 32 H -0.009 1.009 33 H -0.013 1.013 34 H 0.263 0.737 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.369 4.013 11.390 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.256 4.256 5 C 0.053 3.947 6 H 0.086 0.914 7 C 0.018 3.982 8 O -0.378 6.378 9 N -0.313 5.313 10 C -0.043 4.043 11 C -0.005 4.005 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.110 4.110 21 N -0.165 5.165 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.136 0.864 25 H 0.227 0.773 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.152 0.848 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.009 0.991 33 H 0.005 0.995 34 H 0.072 0.928 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.062 2.535 11.220 22.264 hybrid contribution 1.138 1.393 -0.651 1.913 sum -17.924 3.927 10.569 21.175 Atomic orbital electron populations 1.22171 0.71976 1.05933 1.04425 1.48785 1.07871 1.03292 1.56420 1.22792 0.90015 0.94696 1.00859 1.19994 0.94183 0.93896 1.17562 1.19891 0.87140 0.94905 0.92794 0.91398 1.22143 0.98222 0.84292 0.93499 1.86572 1.87226 1.28198 1.35839 1.60499 1.20391 1.27673 1.22749 1.21822 0.93539 0.92221 0.96674 1.18903 0.93301 0.95245 0.93072 1.21607 1.13537 0.95046 1.28014 0.91857 1.26015 0.99571 0.97743 0.96585 1.70125 1.32794 1.19035 1.35425 0.85455 0.78162 0.78741 0.78388 1.19029 1.21002 1.19012 1.23632 0.94321 0.95467 0.97575 1.77295 1.02294 1.09864 1.27067 0.89898 0.89380 0.86405 0.77319 0.94514 0.91930 0.76969 0.84822 0.96144 0.92163 0.99056 0.99507 0.92831 0.81321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.47 127.77 1.47 2.59 16 2 N -0.38 -8.63 4.01 -369.56 -1.48 -10.11 16 3 C 0.06 1.36 11.40 83.54 0.95 2.31 16 4 C -0.24 -6.76 4.56 -20.15 -0.09 -6.86 16 5 C 0.16 4.72 2.84 44.17 0.13 4.85 16 6 H 0.07 1.77 7.79 -2.39 -0.02 1.75 16 7 C 0.10 2.53 6.79 71.98 0.49 3.02 16 8 O -0.57 -16.21 12.52 -148.98 -1.87 -18.08 16 9 N -0.68 -25.50 6.06 -495.45 -3.00 -28.50 16 10 C 0.09 3.68 5.42 86.30 0.47 4.14 16 11 C 0.03 1.78 5.23 29.85 0.16 1.93 16 12 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 15 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.08 2.39 10.76 85.23 0.92 3.31 16 21 N -0.34 -10.52 12.58 -57.03 -0.72 -11.24 16 22 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 26 H 0.04 1.01 7.35 -2.39 -0.02 1.00 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.38 7.34 9.12 -74.06 -0.68 6.67 16 29 H 0.33 12.95 8.16 -89.70 -0.73 12.22 16 30 H 0.02 0.84 8.05 -2.39 -0.02 0.82 16 31 H 0.06 2.52 7.36 -2.39 -0.02 2.50 16 32 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 33 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.17 5.77 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -75.56 301.21 0.11 -75.46 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.32 Total: 19.46 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 5.18 Total: -15.58 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -4.92 Total: -107.96 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.87 Total: -18.08 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.56 0.11 -75.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308873231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.468 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds