Wall clock time and date at job start Sun Mar 29 2020 22:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00451 * 2 1 3 5 5 C 1.50695 * 109.47394 * 120.00526 * 2 1 3 6 6 N 1.31041 * 126.46588 * 60.29684 * 5 2 1 7 7 C 1.35018 * 105.59477 * 180.12783 * 6 5 2 8 8 N 1.38842 * 126.38847 * 179.90333 * 7 6 5 9 9 C 1.46499 * 119.99880 * 179.43445 * 8 7 6 10 10 C 1.53004 * 109.47198 * 180.27747 * 9 8 7 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47115 * 89.99974 * 15 13 11 17 17 H 1.48509 * 109.46780 * 210.00159 * 15 13 11 18 18 H 1.48497 * 109.46888 * 329.99916 * 15 13 11 19 19 N 1.30632 * 107.22448 * 359.63671 * 7 6 5 20 20 O 1.21293 * 110.12867 * 0.23539 * 19 7 6 21 21 H 1.09004 * 109.46984 * 300.00026 * 1 2 3 22 22 H 1.09006 * 109.47309 * 59.99459 * 1 2 3 23 23 H 1.08999 * 109.47565 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47130 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47435 * 299.99905 * 3 2 1 26 26 H 1.08995 * 109.47328 * 60.00374 * 3 2 1 27 27 H 1.09003 * 109.46921 * 299.99438 * 4 2 1 28 28 H 1.08997 * 109.47335 * 59.99423 * 4 2 1 29 29 H 1.09001 * 109.47403 * 180.02562 * 4 2 1 30 30 H 0.97001 * 120.00270 * 359.71613 * 8 7 6 31 31 H 1.09009 * 109.47454 * 300.27516 * 9 8 7 32 32 H 1.08998 * 109.47492 * 60.27811 * 9 8 7 33 33 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 34 34 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 35 35 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 7 1.7997 -1.9574 1.5592 7 6 2.4426 -2.1499 2.7308 8 7 2.4787 -3.3265 3.4670 9 6 3.2341 -3.3830 4.7209 10 6 3.1167 -4.7842 5.3243 11 6 3.8932 -4.8422 6.6145 12 1 4.4184 -3.9673 6.9685 13 6 3.9333 -6.0121 7.3430 14 7 3.2942 -7.0775 6.9117 15 14 4.8965 -6.0842 8.9420 16 1 4.0106 -5.7031 10.0711 17 1 5.4020 -7.4645 9.1534 18 1 6.0426 -5.1425 8.8722 19 7 3.0291 -1.0242 3.0396 20 8 2.8034 -0.1890 2.1895 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6765 -0.2074 -2.1393 29 1 3.1299 -0.7216 -1.2492 30 1 2.0071 -4.1122 3.1490 31 1 4.2826 -3.1590 4.5239 32 1 2.8315 -2.6511 5.4210 33 1 2.0683 -5.0081 5.5213 34 1 3.5194 -5.5162 4.6242 35 1 3.3220 -7.9005 7.4245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308892841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:20 Heat of formation + Delta-G solvation = 49.982342 kcal Electronic energy + Delta-G solvation = -16655.444616 eV Core-core repulsion = 13884.276323 eV Total energy + Delta-G solvation = -2771.168294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.97343 -37.50984 -36.69229 -34.39499 -32.82180 -30.88088 -29.14850 -27.58325 -27.57812 -24.86091 -24.03406 -22.48925 -21.05139 -19.68512 -17.65068 -17.59357 -16.40952 -15.76039 -15.34998 -14.52860 -14.40208 -14.25399 -14.01778 -13.91897 -12.66432 -12.66311 -12.30910 -12.15192 -11.96348 -11.94697 -11.76241 -11.44495 -11.25881 -11.13535 -11.01513 -10.64719 -10.55725 -10.45469 -9.81314 -9.65596 -9.32660 -8.45614 -7.72632 -6.10355 -4.13783 1.55706 2.89581 3.04276 3.20604 3.28854 3.35114 3.39799 4.14389 4.40403 4.55913 4.61530 4.75590 5.16606 5.26595 5.30954 5.33184 5.48632 5.49311 5.55576 5.57177 5.74911 5.90884 5.98475 6.00858 6.24580 6.26654 6.27324 6.67589 7.35352 7.59732 7.61661 7.86780 7.89040 8.26118 8.85588 8.92228 9.50976 11.01297 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.065214 B = 0.003907 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.255664 B = 7165.780566 C = 7393.357796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 C -0.148 4.148 4 C -0.140 4.140 5 C 0.192 3.808 6 N -0.510 5.510 7 C 0.430 3.570 8 N -0.687 5.687 9 C 0.139 3.861 10 C 0.014 3.986 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 N -0.442 5.442 20 O 0.056 5.944 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.415 0.585 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 14.422 -15.945 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 C -0.206 4.206 4 C -0.197 4.197 5 C -0.030 4.030 6 N -0.251 5.251 7 C 0.069 3.931 8 N -0.334 5.334 9 C 0.017 3.983 10 C -0.023 4.023 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 N -0.173 5.173 20 O 0.013 5.987 21 H 0.080 0.920 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.252 0.748 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.349 14.049 -15.106 21.083 hybrid contribution 0.297 -0.517 0.792 0.992 sum -4.052 13.531 -14.314 20.110 Atomic orbital electron populations 1.21903 0.91527 1.03598 1.02719 1.19150 0.96625 0.94614 0.86678 1.21943 1.02192 0.93270 1.03199 1.21903 1.01656 1.01263 0.94923 1.28313 0.91755 0.88698 0.94238 1.71745 1.26100 1.14846 1.12426 1.22250 0.92541 0.89925 0.88400 1.44001 1.57594 1.07524 1.24278 1.21755 0.93730 1.01717 0.81130 1.19307 0.98183 0.88941 0.95917 1.21009 1.31678 0.97466 1.05950 0.92232 1.24998 0.95581 0.95533 0.98145 1.69959 1.42455 1.01791 1.38949 0.86494 0.80244 0.77338 0.83375 1.20522 1.21117 1.19713 1.74851 1.28997 1.00158 1.13344 1.85243 1.52580 1.35909 1.24977 0.92048 0.90856 0.91108 0.91492 0.90854 0.91487 0.91104 0.90854 0.92054 0.74816 0.93003 0.92985 0.95734 0.95732 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.46 37.16 0.31 -0.80 16 2 C 0.03 0.29 0.99 -155.66 -0.15 0.14 16 3 C -0.15 -1.07 8.06 37.16 0.30 -0.77 16 4 C -0.14 -1.12 8.46 37.16 0.31 -0.81 16 5 C 0.19 2.71 6.59 -12.99 -0.09 2.62 16 6 N -0.51 -8.57 11.57 -12.67 -0.15 -8.71 16 7 C 0.43 8.29 8.94 -321.19 -2.87 5.42 16 8 N -0.69 -13.59 5.72 -63.37 -0.36 -13.96 16 9 C 0.14 3.07 5.96 -4.04 -0.02 3.05 16 10 C 0.01 0.36 5.09 -27.88 -0.14 0.22 16 11 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 15 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 N -0.44 -8.59 11.84 28.63 0.34 -8.25 16 20 O 0.06 0.91 10.75 18.06 0.19 1.10 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.41 7.64 8.60 -40.82 -0.35 7.29 16 31 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -31.37 301.64 -7.86 -39.23 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.39 Total: -0.44 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.76 Total: -4.34 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.57 Total: -56.63 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.19 Total: 1.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.37 -7.86 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308892841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.211 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds