Wall clock time and date at job start Sun Mar 29 2020 22:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00451 * 2 1 3 5 5 C 1.50695 * 109.47394 * 120.00526 * 2 1 3 6 6 N 1.31041 * 126.46588 * 60.29684 * 5 2 1 7 7 C 1.35018 * 105.59477 * 180.12783 * 6 5 2 8 8 N 1.38842 * 126.38847 * 179.90333 * 7 6 5 9 9 C 1.46499 * 119.99880 * 179.43445 * 8 7 6 10 10 C 1.53004 * 109.47198 * 180.27747 * 9 8 7 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47115 * 89.99974 * 15 13 11 17 17 H 1.48509 * 109.46780 * 210.00159 * 15 13 11 18 18 H 1.48497 * 109.46888 * 329.99916 * 15 13 11 19 19 N 1.30632 * 107.22448 * 359.63671 * 7 6 5 20 20 O 1.21293 * 110.12867 * 0.23539 * 19 7 6 21 21 H 1.09004 * 109.46984 * 300.00026 * 1 2 3 22 22 H 1.09006 * 109.47309 * 59.99459 * 1 2 3 23 23 H 1.08999 * 109.47565 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47130 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47435 * 299.99905 * 3 2 1 26 26 H 1.08995 * 109.47328 * 60.00374 * 3 2 1 27 27 H 1.09003 * 109.46921 * 299.99438 * 4 2 1 28 28 H 1.08997 * 109.47335 * 59.99423 * 4 2 1 29 29 H 1.09001 * 109.47403 * 180.02562 * 4 2 1 30 30 H 0.97001 * 120.00270 * 359.71613 * 8 7 6 31 31 H 1.09009 * 109.47454 * 300.27516 * 9 8 7 32 32 H 1.08998 * 109.47492 * 60.27811 * 9 8 7 33 33 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 34 34 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 35 35 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 7 1.7997 -1.9574 1.5592 7 6 2.4426 -2.1499 2.7308 8 7 2.4787 -3.3265 3.4670 9 6 3.2341 -3.3830 4.7209 10 6 3.1167 -4.7842 5.3243 11 6 3.8932 -4.8422 6.6145 12 1 4.4184 -3.9673 6.9685 13 6 3.9333 -6.0121 7.3430 14 7 3.2942 -7.0775 6.9117 15 14 4.8965 -6.0842 8.9420 16 1 4.0106 -5.7031 10.0711 17 1 5.4020 -7.4645 9.1534 18 1 6.0426 -5.1425 8.8722 19 7 3.0291 -1.0242 3.0396 20 8 2.8034 -0.1890 2.1895 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6765 -0.2074 -2.1393 29 1 3.1299 -0.7216 -1.2492 30 1 2.0071 -4.1122 3.1490 31 1 4.2826 -3.1590 4.5239 32 1 2.8315 -2.6511 5.4210 33 1 2.0683 -5.0081 5.5213 34 1 3.5194 -5.5162 4.6242 35 1 3.3220 -7.9005 7.4245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308892841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:20 Heat of formation + Delta-G solvation = 30.353677 kcal Electronic energy + Delta-G solvation = -16656.295779 eV Core-core repulsion = 13884.276323 eV Total energy + Delta-G solvation = -2772.019456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.35159 -38.32605 -38.27117 -36.02004 -34.72439 -32.39286 -30.97130 -28.21238 -28.21091 -26.80610 -25.31058 -23.92738 -22.85772 -20.85859 -19.02192 -18.97889 -18.43455 -17.04376 -16.68423 -16.42280 -15.90077 -15.56747 -15.02276 -14.93951 -14.30732 -13.63327 -13.59963 -13.27394 -13.25913 -12.93793 -12.85552 -12.66858 -12.58991 -12.51963 -12.31985 -12.03056 -11.92641 -11.84450 -11.68351 -11.45166 -11.24754 -10.62407 -9.29239 -8.27561 -6.39280 0.32169 1.39837 1.41209 1.46050 1.52376 1.71859 1.98392 2.39156 2.98819 3.07243 3.68155 3.88857 3.90340 3.99825 4.30539 4.37738 4.52293 4.73106 4.74063 4.77882 4.86731 4.93555 4.98278 4.98378 5.07140 5.27685 5.31797 5.36067 5.43279 5.49396 5.67040 5.94558 6.10264 6.37360 6.74196 7.30359 7.49520 8.84767 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.065214 B = 0.003907 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.255664 B = 7165.780566 C = 7393.357796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.208 3.792 6 N -0.525 5.525 7 C 0.415 3.585 8 N -0.690 5.690 9 C 0.164 3.836 10 C 0.024 3.976 11 C -0.547 4.547 12 H 0.062 0.938 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.970 3.030 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.264 1.264 19 N -0.467 5.467 20 O 0.058 5.942 21 H 0.056 0.944 22 H 0.108 0.892 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.419 0.581 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 16.055 -16.888 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.195 4.195 5 C -0.013 4.013 6 N -0.265 5.265 7 C 0.053 3.947 8 N -0.338 5.338 9 C 0.040 3.960 10 C -0.014 4.014 11 C -0.585 4.585 12 H 0.081 0.919 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.794 3.206 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.188 1.188 19 N -0.198 5.198 20 O 0.015 5.985 21 H 0.075 0.925 22 H 0.127 0.873 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.257 0.743 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.375 15.696 -16.077 22.891 hybrid contribution 0.245 -0.952 0.954 1.370 sum -4.130 14.744 -15.123 21.521 Atomic orbital electron populations 1.21933 0.90240 1.03079 1.04250 1.19630 0.97490 0.95549 0.84648 1.21983 1.02005 0.91698 1.04690 1.21934 1.01376 1.00696 0.95491 1.29510 0.89433 0.87974 0.94368 1.71769 1.26685 1.16343 1.11740 1.22395 0.93350 0.89678 0.89244 1.43689 1.57907 1.08301 1.23911 1.21246 0.93633 0.99201 0.81915 1.19109 0.96577 0.90473 0.95198 1.21417 1.32180 0.97884 1.07058 0.91946 1.25930 0.96478 0.95024 1.01853 1.70074 1.43653 1.02434 1.40548 0.85377 0.78900 0.77631 0.78735 1.19640 1.20477 1.18834 1.74834 1.29666 1.00555 1.14761 1.85197 1.53013 1.35155 1.25158 0.92535 0.87333 0.92665 0.91879 0.87555 0.91862 0.92668 0.87329 0.92559 0.74323 0.93595 0.93541 0.97471 0.97478 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.46 71.98 0.61 -1.24 16 2 C 0.03 0.47 0.99 -52.93 -0.05 0.42 16 3 C -0.15 -1.66 8.06 71.98 0.58 -1.08 16 4 C -0.14 -1.85 8.46 71.98 0.61 -1.24 16 5 C 0.21 5.69 6.59 88.36 0.58 6.27 16 6 N -0.53 -17.62 11.57 -311.42 -3.60 -21.22 16 7 C 0.41 16.17 8.94 260.92 2.33 18.50 16 8 N -0.69 -28.02 5.72 -357.19 -2.04 -30.06 16 9 C 0.16 7.41 5.96 86.38 0.52 7.93 16 10 C 0.02 1.27 5.09 29.85 0.15 1.42 16 11 C -0.55 -31.17 9.11 25.60 0.23 -30.93 16 12 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 15 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 N -0.47 -18.22 11.84 -66.67 -0.79 -19.00 16 20 O 0.06 1.87 10.75 74.70 0.80 2.68 16 21 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 15.99 8.60 -92.71 -0.80 15.19 16 31 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -67.99 301.64 2.98 -65.01 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.28 Total: 10.95 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.02 Total: 0.85 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.15 Total: -125.60 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.80 Total: 2.68 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.99 2.98 -65.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308892841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.365 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds