Wall clock time and date at job start Sun Mar 29 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 14 14 O 1.42904 * 109.47325 * 300.00117 * 12 11 10 15 15 C 1.50706 * 109.47223 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99684 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00362 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99789 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00051 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46906 * 60.00341 * 19 17 15 21 21 H 1.48499 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47329 * 300.00271 * 19 17 15 23 23 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 24 24 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 26 26 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 27 27 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 28 28 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 29 29 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 30 30 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 31 31 H 1.00906 * 111.00034 * 151.04989 * 10 2 1 32 32 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 33 33 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 34 34 H 0.96701 * 113.99527 * 299.99870 * 14 12 11 35 35 H 0.97003 * 120.00120 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 1 3.5903 -0.9272 3.3692 14 8 1.7077 -1.6127 3.8740 15 6 2.6588 0.4054 4.7519 16 1 2.3629 1.4376 4.6362 17 6 3.0938 -0.0539 5.9769 18 7 3.4536 -1.3110 6.1179 19 14 3.1736 1.1097 7.4360 20 1 1.8177 1.6471 7.7152 21 1 3.6698 0.3759 8.6278 22 1 4.0961 2.2311 7.1250 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 4.1058 -2.6958 -1.4554 29 1 6.5342 -1.7002 -1.5146 30 1 6.3374 0.9550 -1.3524 31 1 2.9173 -1.1204 1.0288 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5526 34 1 0.8019 -1.3350 4.0676 35 1 3.7601 -1.6341 6.9796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308917339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:55 Heat of formation + Delta-G solvation = 26.026187 kcal Electronic energy + Delta-G solvation = -17170.562883 eV Core-core repulsion = 14398.355772 eV Total energy + Delta-G solvation = -2772.207110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04906 -37.31269 -35.34450 -32.52514 -32.03641 -30.51670 -29.79435 -27.43927 -26.25621 -24.08035 -21.43617 -20.98637 -20.49526 -19.85739 -17.19973 -16.90094 -15.76759 -15.43691 -14.60988 -14.45295 -14.17305 -13.81994 -13.64260 -13.30366 -12.93191 -12.75228 -12.48351 -12.11539 -11.82663 -11.62266 -11.39412 -10.98219 -10.87979 -10.77634 -10.65102 -10.40554 -10.05002 -9.33328 -8.97235 -8.55256 -8.50696 -8.06485 -7.80381 -5.97850 -4.16233 1.99896 2.59603 2.96189 3.30548 3.35475 3.37501 4.32900 4.45235 4.71570 4.91399 4.97054 5.18297 5.21450 5.29727 5.51978 5.57117 5.74697 5.83434 5.89590 6.08403 6.11546 6.20908 6.26649 6.35950 6.56892 6.73801 6.87883 7.09256 7.55366 7.70520 7.79612 7.86356 7.92864 8.23107 8.87316 9.48190 9.64517 11.06389 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.005988 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.800394 B = 4674.886772 C = 5164.095978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.053 0.947 4 C 0.131 3.869 5 N -0.371 5.371 6 C 0.056 3.944 7 C -0.277 4.277 8 C 0.042 3.958 9 N -0.296 5.296 10 N -0.672 5.672 11 C 0.037 3.963 12 C 0.237 3.763 13 H 0.049 0.951 14 O -0.555 6.555 15 C -0.574 4.574 16 H 0.054 0.946 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.145 0.855 30 H 0.180 0.820 31 H 0.334 0.666 32 H 0.022 0.978 33 H 0.060 0.940 34 H 0.343 0.657 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 0.037 -15.452 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 H 0.071 0.929 4 C 0.009 3.991 5 N -0.153 5.153 6 C -0.090 4.090 7 C -0.306 4.306 8 C -0.144 4.144 9 N -0.117 5.117 10 N -0.304 5.304 11 C -0.092 4.092 12 C 0.179 3.821 13 H 0.067 0.933 14 O -0.357 6.357 15 C -0.612 4.612 16 H 0.072 0.928 17 C -0.126 4.126 18 N -0.495 5.495 19 Si 0.717 3.283 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.190 0.810 29 H 0.163 0.837 30 H 0.197 0.803 31 H 0.152 0.848 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.186 0.814 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.103 0.216 -15.175 15.321 hybrid contribution 1.079 0.894 0.691 1.562 sum -1.024 1.110 -14.484 14.563 Atomic orbital electron populations 1.21720 0.93760 1.02463 1.01452 1.21836 0.96223 0.96947 0.89396 0.92908 1.22051 0.74251 1.03222 0.99536 1.48786 1.06617 1.03965 1.55966 1.22607 0.90306 0.94692 1.01434 1.21492 0.97538 0.94505 1.17099 1.23863 0.94549 0.95986 0.99989 1.77340 1.04360 1.06058 1.23951 1.60684 1.33166 1.33298 1.03227 1.22908 1.00050 0.94062 0.92152 1.19264 0.89641 0.85057 0.88185 0.93318 1.86549 1.21391 1.35711 1.92014 1.21600 1.47542 0.96624 0.95450 0.92815 1.25025 0.94024 0.94828 0.98773 1.70075 1.41235 1.13935 1.24221 0.86725 0.78510 0.81037 0.82023 1.20134 1.21153 1.20211 0.92979 0.91801 0.91881 0.89662 0.87885 0.80994 0.83711 0.80322 0.84769 0.96021 0.92111 0.81421 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.41 37.16 0.35 -1.35 16 2 C 0.07 0.98 2.75 -67.71 -0.19 0.80 16 3 H 0.05 0.89 7.71 -51.92 -0.40 0.49 16 4 C 0.13 1.56 6.00 -4.04 -0.02 1.54 16 5 N -0.37 -5.13 2.98 -61.37 -0.18 -5.32 16 6 C 0.06 0.69 11.42 -17.22 -0.20 0.49 16 7 C -0.28 -3.44 10.80 -40.01 -0.43 -3.87 16 8 C 0.04 0.57 12.03 -17.37 -0.21 0.37 16 9 N -0.30 -4.66 12.34 30.63 0.38 -4.28 16 10 N -0.67 -12.28 6.18 -106.73 -0.66 -12.93 16 11 C 0.04 0.80 5.09 -3.83 -0.02 0.78 16 12 C 0.24 6.19 3.03 -27.88 -0.08 6.11 16 13 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 14 O -0.55 -14.73 12.59 -35.23 -0.44 -15.18 16 15 C -0.57 -16.21 8.76 -34.44 -0.30 -16.51 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 18 N -0.86 -25.92 12.84 55.43 0.71 -25.21 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.87 7.45 -51.93 -0.39 0.49 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.05 8.07 -51.93 -0.42 0.63 16 28 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 31 H 0.33 6.43 7.74 -39.29 -0.30 6.12 16 32 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.06 1.28 7.44 -51.93 -0.39 0.90 16 34 H 0.34 8.21 9.04 45.56 0.41 8.62 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -32.80 300.78 -6.29 -39.08 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.40 Total: 12.20 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.20 Total: -9.46 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.25 Total: -47.74 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.44 Total: -15.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.80 -6.29 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308917339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.111 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds