Wall clock time and date at job start Sun Mar 29 2020 22:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 14 14 O 1.42904 * 109.47325 * 300.00117 * 12 11 10 15 15 C 1.50706 * 109.47223 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99684 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00362 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99789 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00051 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46906 * 60.00341 * 19 17 15 21 21 H 1.48499 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47329 * 300.00271 * 19 17 15 23 23 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 24 24 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 26 26 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 27 27 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 28 28 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 29 29 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 30 30 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 31 31 H 1.00906 * 111.00034 * 151.04989 * 10 2 1 32 32 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 33 33 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 34 34 H 0.96701 * 113.99527 * 299.99870 * 14 12 11 35 35 H 0.97003 * 120.00120 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 1 3.5903 -0.9272 3.3692 14 8 1.7077 -1.6127 3.8740 15 6 2.6588 0.4054 4.7519 16 1 2.3629 1.4376 4.6362 17 6 3.0938 -0.0539 5.9769 18 7 3.4536 -1.3110 6.1179 19 14 3.1736 1.1097 7.4360 20 1 1.8177 1.6471 7.7152 21 1 3.6698 0.3759 8.6278 22 1 4.0961 2.2311 7.1250 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6055 -0.2617 -2.1369 27 1 1.7517 -1.7714 -1.2056 28 1 4.1058 -2.6958 -1.4554 29 1 6.5342 -1.7002 -1.5146 30 1 6.3374 0.9550 -1.3524 31 1 2.9173 -1.1204 1.0288 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5526 34 1 0.8019 -1.3350 4.0676 35 1 3.7601 -1.6341 6.9796 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308917339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:55 Heat of formation + Delta-G solvation = 0.540751 kcal Electronic energy + Delta-G solvation = -17171.668014 eV Core-core repulsion = 14398.355772 eV Total energy + Delta-G solvation = -2773.312242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03651 -38.83021 -37.12246 -34.27636 -33.76982 -31.82036 -30.82151 -29.31191 -27.29790 -25.97038 -22.69095 -22.39403 -21.86176 -20.98374 -19.02221 -18.18363 -17.21872 -16.69378 -16.66559 -16.04308 -15.66851 -15.30031 -14.90289 -14.76754 -14.44397 -13.87876 -13.61873 -13.46032 -13.15673 -12.94214 -12.89854 -12.84516 -12.69456 -12.53030 -12.03582 -11.96316 -11.51318 -11.08340 -10.74059 -10.37599 -10.10828 -9.49959 -9.34693 -8.16325 -6.43180 1.01438 1.38273 1.40361 1.48698 1.66508 1.98192 2.36256 3.08628 3.16261 3.56582 3.93691 4.08479 4.18944 4.21029 4.26938 4.39463 4.48617 4.53160 4.62218 4.79977 4.88125 4.92894 4.96377 5.07492 5.17272 5.36977 5.56191 5.69696 5.77117 5.96033 6.12148 6.17517 6.35385 6.69205 6.79675 7.31043 7.57525 8.88096 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026265 B = 0.005988 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.800394 B = 4674.886772 C = 5164.095978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.068 3.932 3 H 0.029 0.971 4 C 0.132 3.868 5 N -0.380 5.380 6 C 0.053 3.947 7 C -0.288 4.288 8 C 0.031 3.969 9 N -0.341 5.341 10 N -0.669 5.669 11 C 0.060 3.940 12 C 0.240 3.760 13 H 0.010 0.990 14 O -0.567 6.567 15 C -0.593 4.593 16 H 0.056 0.944 17 C 0.027 3.973 18 N -0.898 5.898 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.271 1.271 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.204 0.796 29 H 0.166 0.834 30 H 0.198 0.802 31 H 0.327 0.673 32 H 0.005 0.995 33 H 0.067 0.933 34 H 0.354 0.646 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 0.100 -16.052 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.043 4.043 3 H 0.047 0.953 4 C 0.011 3.989 5 N -0.162 5.162 6 C -0.093 4.093 7 C -0.317 4.317 8 C -0.155 4.155 9 N -0.163 5.163 10 N -0.300 5.300 11 C -0.070 4.070 12 C 0.182 3.818 13 H 0.028 0.972 14 O -0.370 6.370 15 C -0.631 4.631 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.534 5.534 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.196 1.196 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.221 0.779 29 H 0.183 0.817 30 H 0.215 0.785 31 H 0.145 0.855 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.198 0.802 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.840 0.294 -15.795 16.051 hybrid contribution 1.315 0.835 0.820 1.760 sum -1.525 1.128 -14.974 15.094 Atomic orbital electron populations 1.21686 0.91787 1.03192 1.02092 1.21922 0.97603 0.95661 0.89080 0.95261 1.22176 0.73607 1.04401 0.98688 1.48949 1.07271 1.03848 1.56171 1.23216 0.90146 0.95816 1.00159 1.21863 0.98672 0.94222 1.16986 1.24349 0.94595 0.97254 0.99273 1.77271 1.05478 1.07702 1.25831 1.60668 1.32617 1.32777 1.03928 1.22445 0.99458 0.93271 0.91787 1.19061 0.88244 0.84738 0.89792 0.97199 1.86485 1.22162 1.36080 1.92275 1.21984 1.47531 0.97051 0.96537 0.92619 1.25908 0.93388 0.96456 1.01850 1.70211 1.42212 1.15947 1.25063 0.85588 0.78976 0.78740 0.78130 1.18991 1.20620 1.19592 0.90069 0.90968 0.93553 0.87400 0.85629 0.77905 0.81664 0.78483 0.85545 0.97654 0.91481 0.80188 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.41 71.98 0.68 -2.29 16 2 C 0.07 1.91 2.75 44.92 0.12 2.03 16 3 H 0.03 0.98 7.71 -2.38 -0.02 0.96 16 4 C 0.13 2.87 6.00 86.38 0.52 3.39 16 5 N -0.38 -10.06 2.98 -348.07 -1.04 -11.10 16 6 C 0.05 1.21 11.42 83.54 0.95 2.16 16 7 C -0.29 -6.83 10.80 21.99 0.24 -6.59 16 8 C 0.03 0.82 12.03 85.24 1.03 1.85 16 9 N -0.34 -10.70 12.34 -57.02 -0.70 -11.40 16 10 N -0.67 -24.24 6.18 -491.57 -3.04 -27.28 16 11 C 0.06 2.62 5.09 86.30 0.44 3.06 16 12 C 0.24 12.82 3.03 29.85 0.09 12.91 16 13 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 14 O -0.57 -30.40 12.59 -148.98 -1.88 -32.28 16 15 C -0.59 -33.82 8.76 25.60 0.22 -33.60 16 16 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 17 C 0.03 1.53 5.40 84.65 0.46 1.99 16 18 N -0.90 -54.77 12.84 21.45 0.28 -54.49 16 19 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 26 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.13 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.20 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.20 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.33 12.61 7.74 -89.69 -0.69 11.92 16 32 H 0.01 0.25 8.05 -2.39 -0.02 0.23 16 33 H 0.07 2.83 7.44 -2.39 -0.02 2.81 16 34 H 0.35 16.96 9.04 -74.06 -0.67 16.29 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -71.19 300.78 0.12 -71.07 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.28 Total: 34.31 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.75 Total: -15.08 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.50 Total: -104.27 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.88 Total: -32.28 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.19 0.12 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308917339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.609 kcal (2) G-P(sol) polarization free energy of solvation -71.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds