Wall clock time and date at job start Sun Mar 29 2020 22:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47392 * 119.99777 * 2 1 3 5 5 N 1.46495 * 109.47254 * 184.99844 * 4 2 1 6 6 C 1.34952 * 126.03833 * 124.99970 * 5 4 2 7 7 C 1.35314 * 107.74655 * 179.97438 * 6 5 4 8 8 C 1.39867 * 107.92156 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20567 * 359.73334 * 8 7 6 10 10 N 1.46906 * 109.47053 * 240.00213 * 2 1 3 11 11 C 1.46904 * 111.00071 * 84.99749 * 10 2 1 12 12 C 1.52992 * 109.47035 * 180.02562 * 11 10 2 13 13 H 1.09006 * 109.47390 * 60.00149 * 12 11 10 14 14 O 1.42904 * 109.47316 * 300.00162 * 12 11 10 15 15 C 1.50703 * 109.47171 * 179.97438 * 12 11 10 16 16 H 1.07993 * 119.99925 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99927 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00311 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99750 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47106 * 90.00403 * 19 17 15 21 21 H 1.48507 * 109.46969 * 210.00028 * 19 17 15 22 22 H 1.48498 * 109.47013 * 329.99958 * 19 17 15 23 23 H 1.09002 * 109.47097 * 299.99982 * 1 2 3 24 24 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 25 25 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47645 * 305.00615 * 4 2 1 27 27 H 1.09005 * 109.46770 * 65.00196 * 4 2 1 28 28 H 1.07994 * 126.12542 * 0.02562 * 6 5 4 29 29 H 1.08000 * 126.03776 * 179.97438 * 7 6 5 30 30 H 1.07998 * 125.89986 * 179.97438 * 8 7 6 31 31 H 1.00901 * 110.99543 * 321.04214 * 10 2 1 32 32 H 1.08999 * 109.46647 * 300.00163 * 11 10 2 33 33 H 1.08996 * 109.46868 * 59.99743 * 11 10 2 34 34 H 0.96697 * 113.99705 * 299.99866 * 14 12 11 35 35 H 0.97001 * 120.00272 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.6178 1.3108 6 6 4.2187 -0.1321 2.3447 7 6 5.5274 -0.2092 2.0097 8 6 5.6115 -0.7603 0.7269 9 7 4.3972 -1.0107 0.3091 10 7 2.0197 -0.6925 -1.1995 11 6 2.0824 0.2226 -2.3470 12 6 2.5950 -0.5331 -3.5745 13 1 1.9182 -1.3565 -3.8031 14 8 3.8999 -1.0497 -3.3054 15 6 2.6587 0.4055 -4.7518 16 1 2.3636 1.4379 -4.6360 17 6 3.0948 -0.0535 -5.9766 18 7 3.4546 -1.3106 -6.1176 19 14 3.1745 1.1101 -7.4357 20 1 4.5107 1.7565 -7.4809 21 1 2.9510 0.3472 -8.6901 22 1 2.1252 2.1516 -7.2962 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2618 2.1369 27 1 1.7517 -1.7715 1.2055 28 1 3.8206 0.2490 3.2734 29 1 6.3599 0.1009 2.6239 30 1 6.5218 -0.9504 0.1778 31 1 1.4496 -1.4979 -1.4100 32 1 1.0870 0.6163 -2.5525 33 1 2.7587 1.0462 -2.1183 34 1 4.5555 -0.3712 -3.0937 35 1 3.7611 -1.6336 -6.9794 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308917342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:57 Heat of formation + Delta-G solvation = 31.678016 kcal Electronic energy + Delta-G solvation = -17286.120148 eV Core-core repulsion = 14514.158119 eV Total energy + Delta-G solvation = -2771.962029 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69336 -37.29948 -35.22370 -32.46957 -31.95340 -30.21473 -29.52664 -27.26129 -26.12861 -23.98888 -21.28948 -20.66855 -20.58657 -19.91365 -16.99503 -16.84259 -15.25076 -15.01529 -14.53263 -14.47217 -14.06446 -13.83572 -13.47482 -13.17560 -12.80079 -12.53305 -12.46655 -12.20438 -12.10364 -11.48832 -11.10953 -10.96430 -10.85497 -10.70375 -10.63183 -9.99831 -9.94195 -9.01834 -8.86890 -8.51025 -8.24600 -7.90652 -7.54312 -5.92739 -4.10851 2.31473 2.90474 3.28308 3.31409 3.38085 3.40390 4.39356 4.55070 4.74439 4.99737 5.11745 5.19070 5.32656 5.34812 5.47680 5.52625 5.76897 5.87242 5.93886 6.09863 6.11741 6.30987 6.32567 6.34857 6.65085 6.95561 7.05665 7.37052 7.68405 7.79596 7.93405 8.06355 8.22824 8.30468 8.93133 9.56748 9.76635 11.11182 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.006139 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.280792 B = 4560.133228 C = 5162.158688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 H 0.075 0.925 4 C 0.145 3.855 5 N -0.363 5.363 6 C 0.028 3.972 7 C -0.278 4.278 8 C 0.015 3.985 9 N -0.215 5.215 10 N -0.652 5.652 11 C 0.042 3.958 12 C 0.238 3.762 13 H 0.048 0.952 14 O -0.547 6.547 15 C -0.573 4.573 16 H 0.052 0.948 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.176 0.824 31 H 0.334 0.666 32 H 0.016 0.984 33 H 0.055 0.945 34 H 0.342 0.658 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 2.706 16.600 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.042 4.042 3 H 0.094 0.906 4 C 0.023 3.977 5 N -0.146 5.146 6 C -0.118 4.118 7 C -0.309 4.309 8 C -0.172 4.172 9 N -0.035 5.035 10 N -0.282 5.282 11 C -0.087 4.087 12 C 0.179 3.821 13 H 0.066 0.934 14 O -0.348 6.348 15 C -0.611 4.611 16 H 0.070 0.930 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.155 0.845 30 H 0.193 0.807 31 H 0.152 0.848 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.184 0.816 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.930 1.586 15.553 15.906 hybrid contribution -0.215 1.793 -0.226 1.820 sum -3.145 3.379 15.328 16.008 Atomic orbital electron populations 1.22488 0.96880 1.02334 1.02394 1.21821 0.92192 0.98244 0.91974 0.90637 1.21747 0.75020 1.02229 0.98720 1.48717 1.06411 1.47557 1.11884 1.22436 0.92699 1.02259 0.94392 1.21413 0.95935 1.14356 0.99150 1.24037 0.96888 1.00939 0.95334 1.78083 0.97968 1.18329 1.09164 1.60484 1.55699 1.08958 1.03048 1.22847 0.98148 0.95626 0.92085 1.19219 0.82976 0.92536 0.87333 0.93422 1.86561 1.19954 1.36300 1.91955 1.21662 1.47400 0.96734 0.95319 0.92992 1.25014 0.94315 0.94800 0.98490 1.70089 1.41372 1.14033 1.23886 0.86710 0.78425 0.81076 0.82340 1.20550 1.21160 1.20004 0.92508 0.91810 0.92175 0.89366 0.90056 0.82048 0.84485 0.80688 0.84779 0.96599 0.92684 0.81553 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.16 37.16 0.34 -1.69 16 2 C 0.07 0.96 2.80 -67.71 -0.19 0.77 16 3 H 0.08 1.15 7.80 -51.93 -0.40 0.74 16 4 C 0.15 1.74 6.17 -4.05 -0.02 1.72 16 5 N -0.36 -5.34 3.68 -61.37 -0.23 -5.57 16 6 C 0.03 0.35 11.45 -17.22 -0.20 0.15 16 7 C -0.28 -3.67 10.80 -40.01 -0.43 -4.10 16 8 C 0.02 0.24 12.03 -17.37 -0.21 0.03 16 9 N -0.22 -3.89 11.45 30.62 0.35 -3.54 16 10 N -0.65 -11.70 5.04 -106.73 -0.54 -12.24 16 11 C 0.04 0.88 5.09 -3.83 -0.02 0.86 16 12 C 0.24 6.19 3.03 -27.89 -0.08 6.11 16 13 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 14 O -0.55 -14.88 12.60 -35.23 -0.44 -15.32 16 15 C -0.57 -16.14 8.76 -34.44 -0.30 -16.44 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 18 N -0.86 -26.03 12.84 55.43 0.71 -25.32 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.18 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.33 5.99 8.47 -39.29 -0.33 5.65 16 32 H 0.02 0.33 7.44 -51.93 -0.39 -0.06 16 33 H 0.05 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.34 8.75 9.04 45.56 0.41 9.16 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 300.26 15.07 4.52 4.52 Total: -1.00 -33.12 300.26 -6.29 -39.41 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.44 Total: 11.85 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.21 Total: -10.40 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.30 Total: -46.67 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.44 Total: -15.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.12 -6.29 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308917342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.091 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds