Wall clock time and date at job start Sun Mar 29 2020 22:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 C 1.52993 * 109.47392 * 119.99777 * 2 1 3 5 5 N 1.46495 * 109.47254 * 184.99844 * 4 2 1 6 6 C 1.34952 * 126.03833 * 124.99970 * 5 4 2 7 7 C 1.35314 * 107.74655 * 179.97438 * 6 5 4 8 8 C 1.39867 * 107.92156 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20567 * 359.73334 * 8 7 6 10 10 N 1.46906 * 109.47053 * 240.00213 * 2 1 3 11 11 C 1.46904 * 111.00071 * 84.99749 * 10 2 1 12 12 C 1.52992 * 109.47035 * 180.02562 * 11 10 2 13 13 H 1.09006 * 109.47390 * 60.00149 * 12 11 10 14 14 O 1.42904 * 109.47316 * 300.00162 * 12 11 10 15 15 C 1.50703 * 109.47171 * 179.97438 * 12 11 10 16 16 H 1.07993 * 119.99925 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99927 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00311 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99750 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47106 * 90.00403 * 19 17 15 21 21 H 1.48507 * 109.46969 * 210.00028 * 19 17 15 22 22 H 1.48498 * 109.47013 * 329.99958 * 19 17 15 23 23 H 1.09002 * 109.47097 * 299.99982 * 1 2 3 24 24 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 25 25 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47645 * 305.00615 * 4 2 1 27 27 H 1.09005 * 109.46770 * 65.00196 * 4 2 1 28 28 H 1.07994 * 126.12542 * 0.02562 * 6 5 4 29 29 H 1.08000 * 126.03776 * 179.97438 * 7 6 5 30 30 H 1.07998 * 125.89986 * 179.97438 * 8 7 6 31 31 H 1.00901 * 110.99543 * 321.04214 * 10 2 1 32 32 H 1.08999 * 109.46647 * 300.00163 * 11 10 2 33 33 H 1.08996 * 109.46868 * 59.99743 * 11 10 2 34 34 H 0.96697 * 113.99705 * 299.99866 * 14 12 11 35 35 H 0.97001 * 120.00272 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.6178 1.3108 6 6 4.2187 -0.1321 2.3447 7 6 5.5274 -0.2092 2.0097 8 6 5.6115 -0.7603 0.7269 9 7 4.3972 -1.0107 0.3091 10 7 2.0197 -0.6925 -1.1995 11 6 2.0824 0.2226 -2.3470 12 6 2.5950 -0.5331 -3.5745 13 1 1.9182 -1.3565 -3.8031 14 8 3.8999 -1.0497 -3.3054 15 6 2.6587 0.4055 -4.7518 16 1 2.3636 1.4379 -4.6360 17 6 3.0948 -0.0535 -5.9766 18 7 3.4546 -1.3106 -6.1176 19 14 3.1745 1.1101 -7.4357 20 1 4.5107 1.7565 -7.4809 21 1 2.9510 0.3472 -8.6901 22 1 2.1252 2.1516 -7.2962 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2618 2.1369 27 1 1.7517 -1.7715 1.2055 28 1 3.8206 0.2490 3.2734 29 1 6.3599 0.1009 2.6239 30 1 6.5218 -0.9504 0.1778 31 1 1.4496 -1.4979 -1.4100 32 1 1.0870 0.6163 -2.5525 33 1 2.7587 1.0462 -2.1183 34 1 4.5555 -0.3712 -3.0937 35 1 3.7611 -1.6336 -6.9794 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308917342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:57 Heat of formation + Delta-G solvation = 5.821589 kcal Electronic energy + Delta-G solvation = -17287.241366 eV Core-core repulsion = 14514.158119 eV Total energy + Delta-G solvation = -2773.083248 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.74362 -38.76399 -37.03338 -34.22448 -33.71075 -31.57924 -30.58011 -29.12953 -27.11938 -25.88548 -22.53468 -22.40302 -21.64231 -21.08931 -18.98529 -18.01830 -16.69087 -16.62071 -16.39570 -15.97781 -15.49037 -15.29356 -14.77147 -14.58615 -14.19375 -14.00810 -13.49819 -13.44264 -13.16018 -13.01631 -12.84524 -12.82614 -12.52161 -12.39022 -12.05463 -11.89873 -11.08125 -10.99189 -10.71910 -10.15111 -9.98253 -9.28989 -8.95618 -8.12531 -6.39022 1.30080 1.38556 1.39541 1.50227 1.94654 2.19499 2.38070 3.12819 3.31815 3.72352 4.01845 4.14241 4.24593 4.35044 4.35748 4.45412 4.49396 4.62067 4.67951 4.85158 4.92479 4.99667 5.07555 5.11605 5.23978 5.33085 5.59963 5.78827 5.97691 6.06474 6.26451 6.43828 6.62037 6.75690 7.13901 7.34956 7.64057 8.91782 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.006139 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.280792 B = 4560.133228 C = 5162.158688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.062 0.938 4 C 0.143 3.857 5 N -0.371 5.371 6 C 0.039 3.961 7 C -0.289 4.289 8 C -0.002 4.002 9 N -0.279 5.279 10 N -0.662 5.662 11 C 0.069 3.931 12 C 0.237 3.763 13 H 0.015 0.985 14 O -0.560 6.560 15 C -0.589 4.589 16 H 0.054 0.946 17 C 0.025 3.975 18 N -0.899 5.899 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.089 0.911 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.208 0.792 29 H 0.161 0.839 30 H 0.179 0.821 31 H 0.332 0.668 32 H 0.019 0.981 33 H 0.044 0.956 34 H 0.346 0.654 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 4.153 18.394 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.040 4.040 3 H 0.080 0.920 4 C 0.022 3.978 5 N -0.154 5.154 6 C -0.107 4.107 7 C -0.319 4.319 8 C -0.189 4.189 9 N -0.100 5.100 10 N -0.292 5.292 11 C -0.061 4.061 12 C 0.179 3.821 13 H 0.033 0.967 14 O -0.362 6.362 15 C -0.627 4.627 16 H 0.073 0.927 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.189 1.189 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.154 0.846 27 H 0.099 0.901 28 H 0.225 0.775 29 H 0.179 0.821 30 H 0.196 0.804 31 H 0.150 0.850 32 H 0.037 0.963 33 H 0.062 0.938 34 H 0.189 0.811 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.773 3.044 17.366 18.030 hybrid contribution 0.045 1.322 -0.687 1.491 sum -3.728 4.366 16.679 17.639 Atomic orbital electron populations 1.22375 0.94493 1.03131 1.03115 1.21883 0.94049 0.97233 0.90834 0.92003 1.21984 0.73977 1.02486 0.99391 1.48922 1.07088 1.47536 1.11856 1.23165 0.92288 1.00265 0.94976 1.21754 0.97418 1.14346 0.98368 1.24337 0.96666 1.01121 0.96750 1.77979 0.99369 1.20850 1.11774 1.60380 1.56919 1.08689 1.03188 1.22299 0.97489 0.94884 0.91432 1.19114 0.82147 0.91493 0.89359 0.96715 1.86515 1.20684 1.36892 1.92133 1.22045 1.47134 0.97110 0.96410 0.92728 1.25909 0.93759 0.96423 1.01628 1.70234 1.42510 1.16130 1.24747 0.85551 0.78740 0.78856 0.78345 1.19907 1.20666 1.18928 0.89235 0.93578 0.91356 0.84564 0.90116 0.77501 0.82146 0.80380 0.85037 0.96325 0.93756 0.81111 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 9.16 71.98 0.66 -2.78 16 2 C 0.07 1.86 2.80 44.91 0.13 1.98 16 3 H 0.06 1.80 7.80 -2.38 -0.02 1.78 16 4 C 0.14 3.04 6.17 86.38 0.53 3.57 16 5 N -0.37 -10.26 3.68 -348.08 -1.28 -11.54 16 6 C 0.04 0.84 11.45 83.54 0.96 1.80 16 7 C -0.29 -7.10 10.80 21.99 0.24 -6.87 16 8 C 0.00 -0.07 12.03 85.24 1.02 0.95 16 9 N -0.28 -10.16 11.45 -57.03 -0.65 -10.81 16 10 N -0.66 -23.97 5.04 -491.57 -2.48 -26.45 16 11 C 0.07 2.95 5.09 86.30 0.44 3.39 16 12 C 0.24 12.78 3.03 29.85 0.09 12.87 16 13 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 14 O -0.56 -31.71 12.60 -148.98 -1.88 -33.59 16 15 C -0.59 -33.77 8.76 25.60 0.22 -33.54 16 16 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 17 C 0.03 1.46 5.40 84.65 0.46 1.91 16 18 N -0.90 -55.78 12.84 21.45 0.28 -55.51 16 19 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.09 7.45 -2.39 -0.02 1.08 16 25 H 0.07 1.27 8.13 -2.38 -0.02 1.25 16 26 H 0.14 1.59 8.07 -2.39 -0.02 1.57 16 27 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.21 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.18 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.33 12.13 8.47 -89.69 -0.76 11.37 16 32 H 0.02 0.78 7.44 -2.39 -0.02 0.76 16 33 H 0.04 1.99 8.05 -2.39 -0.02 1.97 16 34 H 0.35 18.48 9.04 -74.06 -0.67 17.81 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -73.83 300.26 0.42 -73.40 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.34 Total: 34.46 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 4.75 Total: -16.70 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.13 Total: -104.30 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.88 Total: -33.59 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.83 0.42 -73.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308917342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.225 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds