Wall clock time and date at job start Sun Mar 29 2020 22:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00193 * 2 1 4 4 C 1.53003 * 109.47436 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47285 * 179.97438 * 4 3 2 6 6 C 1.34953 * 126.03197 * 125.31499 * 5 4 3 7 7 C 1.35323 * 107.74107 * 180.14751 * 6 5 4 8 8 C 1.50701 * 126.03838 * 179.87044 * 7 6 5 9 9 N 1.46903 * 109.47245 * 269.71464 * 8 7 6 10 10 C 1.46893 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47176 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 C 1.39873 * 107.91926 * 359.61218 * 7 6 5 20 20 N 1.30835 * 108.20227 * 0.23891 * 19 7 6 21 21 H 1.08998 * 109.46880 * 299.99584 * 1 2 3 22 22 H 1.08997 * 109.47196 * 60.00157 * 1 2 3 23 23 H 1.09006 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47177 * 60.00036 * 3 2 1 25 25 H 1.08998 * 109.47399 * 299.99918 * 3 2 1 26 26 H 1.09008 * 109.46884 * 59.99945 * 4 3 2 27 27 H 1.08996 * 109.47260 * 300.00817 * 4 3 2 28 28 H 1.07988 * 126.13153 * 359.97438 * 6 5 4 29 29 H 1.08993 * 109.46849 * 149.71787 * 8 7 6 30 30 H 1.09003 * 109.46941 * 29.71113 * 8 7 6 31 31 H 1.00893 * 110.99793 * 303.95739 * 9 8 7 32 32 H 1.09001 * 109.46739 * 60.00281 * 10 9 8 33 33 H 1.09000 * 109.47767 * 300.00540 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 35 35 H 1.07999 * 125.89451 * 180.22618 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0302 2.9921 0.8906 7 6 5.3262 4.2666 0.5453 8 6 6.2850 5.1801 1.2644 9 7 5.5605 5.9388 2.2928 10 6 6.4656 6.8416 3.0164 11 6 5.6884 7.6016 4.0601 12 1 4.6282 7.4307 4.1747 13 6 6.3307 8.5151 4.8687 14 7 7.6217 8.7236 4.7288 15 14 5.3674 9.4566 6.1629 16 1 4.7560 8.4990 7.1190 17 1 6.2824 10.3694 6.8944 18 1 4.2983 10.2497 5.5046 19 6 4.5895 4.5842 -0.6005 20 7 3.8729 3.5397 -0.9282 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6886 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8575 0.6435 -0.8892 27 1 3.8568 0.6438 0.8907 28 1 5.4380 2.4488 1.7301 29 1 6.7325 5.8716 0.5506 30 1 7.0685 4.5864 1.7355 31 1 4.7880 6.4474 1.8897 32 1 6.9148 7.5446 2.3149 33 1 7.2501 6.2592 3.4995 34 1 8.0737 9.3660 5.2980 35 1 4.6087 5.5286 -1.1241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309035679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:13 Heat of formation + Delta-G solvation = 31.324398 kcal Electronic energy + Delta-G solvation = -16122.496102 eV Core-core repulsion = 13350.518739 eV Total energy + Delta-G solvation = -2771.977363 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05311 -38.25304 -35.42723 -33.74306 -32.41319 -30.26924 -29.41903 -26.98374 -26.21585 -23.95145 -23.34879 -21.33828 -20.64991 -19.87989 -17.31182 -16.54417 -16.44551 -15.84571 -15.57594 -14.80955 -14.66779 -14.35073 -14.03035 -13.54040 -13.21789 -13.03269 -12.49761 -12.27167 -12.07266 -11.75348 -11.64396 -11.41736 -11.14833 -10.74323 -10.63427 -10.32389 -10.03817 -9.89055 -9.29228 -9.18282 -8.45543 -8.20960 -7.19689 -6.00314 -4.02076 1.99916 2.39945 3.01734 3.35483 3.39088 3.42510 3.53746 4.43898 4.46420 4.65727 4.93916 5.00474 5.01871 5.03577 5.10422 5.31833 5.35419 5.38991 5.43214 5.54322 5.74181 5.85671 6.03294 6.32302 6.53342 6.68849 6.84456 7.13430 7.30034 7.47314 7.82226 7.82996 8.17268 8.47110 8.67346 9.07514 9.62719 11.10731 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.003852 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.190709 B = 7267.631382 C = 7851.669011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.051 3.949 4 C 0.143 3.857 5 N -0.380 5.380 6 C 0.071 3.929 7 C -0.217 4.217 8 C 0.133 3.867 9 N -0.687 5.687 10 C 0.193 3.807 11 C -0.513 4.513 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.056 3.944 20 N -0.306 5.306 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.329 0.671 32 H -0.014 1.014 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -15.235 -10.185 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.027 4.027 4 C 0.020 3.980 5 N -0.165 5.165 6 C -0.074 4.074 7 C -0.228 4.228 8 C 0.002 3.998 9 N -0.318 5.318 10 C 0.067 3.933 11 C -0.552 4.552 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.131 4.131 20 N -0.127 5.127 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.191 0.809 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.004 0.996 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.883 -16.432 -10.444 21.835 hybrid contribution 0.096 1.837 0.715 1.973 sum -9.787 -14.595 -9.729 20.087 Atomic orbital electron populations 1.22763 0.80173 1.02904 1.00390 1.87763 1.20420 1.27289 1.95618 1.22695 0.92941 0.84992 1.02048 1.21267 0.92274 0.79595 1.04817 1.48288 1.34432 1.11572 1.22185 1.22343 0.93966 0.95832 0.95300 1.20243 1.07231 0.95412 0.99918 1.20134 0.93333 0.94117 0.92217 1.60709 1.12426 1.31994 1.26633 1.19559 0.91886 0.89480 0.92421 1.21165 0.95570 1.21104 1.17377 0.92080 1.24987 0.94944 0.97027 0.97633 1.69958 1.08584 1.35483 1.39815 0.86550 0.79595 0.79618 0.81555 1.20198 1.21361 1.20278 1.23827 0.95117 0.97654 0.96496 1.77239 1.24484 0.96961 1.14021 0.93780 0.93820 0.89330 0.92492 0.91705 0.89274 0.87872 0.80888 0.95551 0.91342 0.85501 0.99588 0.95431 0.92887 0.80282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.95 10.70 -35.23 -0.38 -4.33 16 3 C 0.05 0.52 6.12 37.16 0.23 0.75 16 4 C 0.14 1.43 6.88 -4.04 -0.03 1.41 16 5 N -0.38 -5.05 3.68 -61.37 -0.23 -5.27 16 6 C 0.07 0.99 11.36 -17.22 -0.20 0.79 16 7 C -0.22 -3.39 5.61 -105.05 -0.59 -3.98 16 8 C 0.13 2.37 6.17 -4.97 -0.03 2.34 16 9 N -0.69 -14.90 6.48 -116.34 -0.75 -15.65 16 10 C 0.19 5.09 5.44 -4.98 -0.03 5.06 16 11 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 12 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 C 0.06 0.83 11.96 -17.36 -0.21 0.62 16 20 N -0.31 -4.60 12.42 30.62 0.38 -4.21 16 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 27 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.33 6.95 8.71 -39.30 -0.34 6.61 16 32 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.18 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -32.32 307.19 -6.17 -38.48 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.38 Total: 0.99 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.16 Total: -5.17 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.14 Total: -51.41 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.38 Total: -4.33 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.32 -6.17 -38.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.809 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds