Wall clock time and date at job start Sun Mar 29 2020 22:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00193 * 2 1 4 4 C 1.53003 * 109.47436 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47285 * 179.97438 * 4 3 2 6 6 C 1.34953 * 126.03197 * 125.31499 * 5 4 3 7 7 C 1.35323 * 107.74107 * 180.14751 * 6 5 4 8 8 C 1.50701 * 126.03838 * 179.87044 * 7 6 5 9 9 N 1.46903 * 109.47245 * 269.71464 * 8 7 6 10 10 C 1.46893 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47176 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 C 1.39873 * 107.91926 * 359.61218 * 7 6 5 20 20 N 1.30835 * 108.20227 * 0.23891 * 19 7 6 21 21 H 1.08998 * 109.46880 * 299.99584 * 1 2 3 22 22 H 1.08997 * 109.47196 * 60.00157 * 1 2 3 23 23 H 1.09006 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47177 * 60.00036 * 3 2 1 25 25 H 1.08998 * 109.47399 * 299.99918 * 3 2 1 26 26 H 1.09008 * 109.46884 * 59.99945 * 4 3 2 27 27 H 1.08996 * 109.47260 * 300.00817 * 4 3 2 28 28 H 1.07988 * 126.13153 * 359.97438 * 6 5 4 29 29 H 1.08993 * 109.46849 * 149.71787 * 8 7 6 30 30 H 1.09003 * 109.46941 * 29.71113 * 8 7 6 31 31 H 1.00893 * 110.99793 * 303.95739 * 9 8 7 32 32 H 1.09001 * 109.46739 * 60.00281 * 10 9 8 33 33 H 1.09000 * 109.47767 * 300.00540 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 35 35 H 1.07999 * 125.89451 * 180.22618 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0302 2.9921 0.8906 7 6 5.3262 4.2666 0.5453 8 6 6.2850 5.1801 1.2644 9 7 5.5605 5.9388 2.2928 10 6 6.4656 6.8416 3.0164 11 6 5.6884 7.6016 4.0601 12 1 4.6282 7.4307 4.1747 13 6 6.3307 8.5151 4.8687 14 7 7.6217 8.7236 4.7288 15 14 5.3674 9.4566 6.1629 16 1 4.7560 8.4990 7.1190 17 1 6.2824 10.3694 6.8944 18 1 4.2983 10.2497 5.5046 19 6 4.5895 4.5842 -0.6005 20 7 3.8729 3.5397 -0.9282 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.6886 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8575 0.6435 -0.8892 27 1 3.8568 0.6438 0.8907 28 1 5.4380 2.4488 1.7301 29 1 6.7325 5.8716 0.5506 30 1 7.0685 4.5864 1.7355 31 1 4.7880 6.4474 1.8897 32 1 6.9148 7.5446 2.3149 33 1 7.2501 6.2592 3.4995 34 1 8.0737 9.3660 5.2980 35 1 4.6087 5.5286 -1.1241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309035679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:13 Heat of formation + Delta-G solvation = 7.898677 kcal Electronic energy + Delta-G solvation = -16123.511917 eV Core-core repulsion = 13350.518739 eV Total energy + Delta-G solvation = -2772.993178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15554 -38.99693 -37.12255 -34.99364 -34.26395 -31.60960 -30.50749 -28.51613 -27.19931 -25.42550 -24.37141 -23.30800 -21.69435 -21.05554 -18.63415 -18.08884 -17.31956 -16.91471 -16.64465 -16.37655 -16.11827 -15.65560 -15.13924 -14.82946 -14.65109 -14.30830 -13.91306 -13.77703 -13.19694 -12.96483 -12.87596 -12.72669 -12.55598 -12.43603 -12.32195 -12.01820 -11.46261 -11.27798 -10.77894 -10.62712 -10.36781 -9.42866 -8.98517 -8.19223 -6.30293 0.91566 1.43007 1.45123 1.46513 1.54488 1.82886 2.43048 2.78170 3.13743 3.59788 3.88636 3.88921 3.96354 4.08608 4.22590 4.40583 4.46154 4.47880 4.53608 4.59821 4.65266 4.81322 4.83292 4.93377 5.13312 5.29801 5.34232 5.63809 5.68692 5.97822 6.06855 6.12363 6.52440 6.71685 6.77853 6.93971 7.40612 8.91872 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.003852 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.190709 B = 7267.631382 C = 7851.669011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.058 3.942 4 C 0.137 3.863 5 N -0.375 5.375 6 C 0.081 3.919 7 C -0.241 4.241 8 C 0.139 3.861 9 N -0.684 5.684 10 C 0.208 3.792 11 C -0.536 4.536 12 H 0.062 0.938 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.972 3.028 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.051 3.949 20 N -0.324 5.324 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.198 0.802 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.332 0.668 32 H -0.038 1.038 33 H 0.003 0.997 34 H 0.265 0.735 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -16.100 -9.813 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.019 4.019 4 C 0.016 3.984 5 N -0.159 5.159 6 C -0.066 4.066 7 C -0.252 4.252 8 C 0.009 3.991 9 N -0.315 5.315 10 C 0.080 3.920 11 C -0.574 4.574 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.796 3.204 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.135 4.135 20 N -0.145 5.145 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.125 0.875 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.215 0.785 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.149 0.851 32 H -0.020 1.020 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.178 -17.327 -10.103 22.962 hybrid contribution 0.467 1.995 0.544 2.120 sum -10.711 -15.332 -9.559 21.004 Atomic orbital electron populations 1.22972 0.78817 1.04317 1.00821 1.87742 1.21936 1.26924 1.95650 1.22539 0.93093 0.85122 1.01178 1.21550 0.92095 0.78187 1.06536 1.48517 1.33867 1.12172 1.21341 1.22696 0.93139 0.95386 0.95382 1.20039 1.08310 0.96035 1.00859 1.20045 0.93672 0.93989 0.91354 1.60614 1.11947 1.30695 1.28239 1.19215 0.91722 0.89132 0.91957 1.21532 0.95859 1.21803 1.18228 0.91959 1.25935 0.95940 0.97920 0.99873 1.70085 1.10287 1.36160 1.40893 0.85403 0.78224 0.78205 0.78562 1.19354 1.20775 1.19196 1.24081 0.94716 0.98317 0.96347 1.77213 1.24934 0.97459 1.14916 0.93417 0.93342 0.87497 0.93199 0.92759 0.88253 0.85493 0.78515 0.95582 0.91385 0.85125 1.02048 0.97890 0.92619 0.78893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.42 10.70 -148.98 -1.59 -9.02 16 3 C 0.06 1.11 6.12 71.98 0.44 1.55 16 4 C 0.14 2.46 6.88 86.38 0.59 3.05 16 5 N -0.38 -9.28 3.68 -348.06 -1.28 -10.56 16 6 C 0.08 2.09 11.36 83.54 0.95 3.04 16 7 C -0.24 -7.30 5.61 -20.14 -0.11 -7.41 16 8 C 0.14 4.97 6.17 85.56 0.53 5.49 16 9 N -0.68 -29.79 6.48 -521.98 -3.38 -33.18 16 10 C 0.21 11.18 5.44 85.56 0.47 11.65 16 11 C -0.54 -30.85 9.32 25.60 0.24 -30.61 16 12 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 13 C 0.00 0.08 5.46 84.65 0.46 0.55 16 14 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 15 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C 0.05 1.48 11.96 85.24 1.02 2.50 16 20 N -0.32 -9.34 12.42 -57.02 -0.71 -10.05 16 21 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.13 1.68 8.07 -2.39 -0.02 1.67 16 28 H 0.20 4.03 8.06 -2.92 -0.02 4.01 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.33 14.05 8.71 -89.70 -0.78 13.27 16 32 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -68.38 307.19 1.46 -66.92 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.29 Total: 14.38 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 5.83 Total: -8.60 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -5.09 Total: -110.14 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.59 Total: -9.02 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.38 1.46 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309035679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.818 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds