Wall clock time and date at job start Sun Mar 29 2020 22:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30071 * 126.21342 * 2 1 4 4 N 1.28655 * 109.54604 * 179.97438 * 3 2 1 5 5 C 1.31070 * 109.31416 * 0.02562 * 4 3 2 6 6 N 1.38256 * 126.37041 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99609 * 359.97229 * 6 5 4 8 8 C 1.53000 * 109.46729 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47478 * 299.99978 * 8 7 6 10 10 C 1.53003 * 109.47274 * 60.00391 * 8 7 6 11 11 C 1.53006 * 109.47039 * 180.02562 * 8 7 6 12 12 C 1.50699 * 109.47242 * 180.02562 * 11 8 7 13 13 H 1.07998 * 120.00133 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99950 * 180.02562 * 12 11 8 15 15 N 1.31509 * 119.99996 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99796 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46840 * 60.00218 * 16 14 12 18 18 H 1.48502 * 109.46809 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47172 * 299.99902 * 16 14 12 20 20 O 1.34582 * 107.26366 * 359.73096 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02398 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02499 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02480 * 1 2 3 24 24 H 0.96994 * 120.00572 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47108 * 299.99727 * 7 6 5 26 26 H 1.09001 * 109.47340 * 60.00541 * 7 6 5 27 27 H 1.09000 * 109.46902 * 59.99756 * 9 8 7 28 28 H 1.08996 * 109.47298 * 180.02562 * 9 8 7 29 29 H 1.09007 * 109.47016 * 300.00216 * 9 8 7 30 30 H 1.08994 * 109.47582 * 59.99633 * 10 8 7 31 31 H 1.09003 * 109.47218 * 180.02562 * 10 8 7 32 32 H 1.09006 * 109.46443 * 299.99066 * 10 8 7 33 33 H 1.09005 * 109.46561 * 300.00151 * 11 8 7 34 34 H 1.08999 * 109.47056 * 59.99691 * 11 8 7 35 35 H 0.97003 * 120.00453 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2755 1.0494 0.0000 4 7 3.5080 0.6804 0.0005 5 6 3.5685 -0.6289 0.0004 6 7 4.7184 -1.3964 0.0013 7 6 6.0320 -0.7478 0.0020 8 6 7.1279 -1.8154 0.0036 9 6 6.9889 -2.6872 1.2533 10 6 6.9911 -2.6887 -1.2452 11 6 8.4999 -1.1381 0.0050 12 6 9.5793 -2.1896 0.0060 13 1 9.3135 -3.2364 0.0052 14 6 10.9064 -1.8154 0.0079 15 7 11.2301 -0.5407 0.0083 16 14 12.2444 -3.1189 0.0098 17 1 12.1121 -3.9657 -1.2030 18 1 13.5759 -2.4614 0.0110 19 1 12.1088 -3.9657 1.2220 20 8 2.3031 -1.0872 0.0057 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 4.6555 -2.3643 0.0014 25 1 6.1309 -0.1264 -0.8880 26 1 6.1298 -0.1260 0.8920 27 1 6.0115 -3.1697 1.2527 28 1 7.7699 -3.4475 1.2546 29 1 7.0865 -2.0650 2.1430 30 1 7.0902 -2.0677 -2.1355 31 1 7.7716 -3.4496 -1.2439 32 1 6.0137 -3.1713 -1.2457 33 1 8.5991 -0.5167 -0.8851 34 1 8.5971 -0.5162 0.8949 35 1 12.1637 -0.2774 0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309090954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:47 Heat of formation + Delta-G solvation = 26.903727 kcal Electronic energy + Delta-G solvation = -16939.264818 eV Core-core repulsion = 14167.095760 eV Total energy + Delta-G solvation = -2772.169057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.81779 -38.08853 -35.87701 -34.77935 -32.51207 -31.72939 -27.76999 -26.96219 -26.60195 -26.21987 -23.33189 -22.38598 -21.95885 -18.62966 -17.70943 -17.33121 -16.39697 -16.07495 -15.16972 -14.56160 -14.39153 -14.09213 -13.44911 -13.29119 -12.93621 -12.86373 -12.63125 -12.15010 -12.10647 -11.57391 -11.39939 -11.06291 -10.91127 -10.74011 -10.72336 -10.46731 -10.40115 -10.33128 -9.87975 -9.31827 -9.01612 -8.39781 -7.97466 -6.03842 -4.05751 1.54205 1.86876 2.74589 3.29781 3.35537 3.36444 3.53633 4.41485 4.43401 4.91510 5.09608 5.14270 5.31389 5.31475 5.37337 5.49282 5.56886 5.65850 5.90107 6.06070 6.10765 6.11302 6.27217 6.54635 6.54853 6.87867 6.96994 6.98879 7.06268 7.32790 7.57603 7.68709 7.93780 8.34674 8.69784 8.98372 9.57653 11.07493 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.066019 B = 0.004401 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.019565 B = 6360.721614 C = 6583.069312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C 0.114 3.886 3 N -0.261 5.261 4 N -0.351 5.351 5 C 0.429 3.571 6 N -0.668 5.668 7 C 0.148 3.852 8 C -0.071 4.071 9 C -0.129 4.129 10 C -0.129 4.129 11 C 0.038 3.962 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 O -0.257 6.257 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.085 0.915 24 H 0.414 0.586 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 -3.261 -0.001 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.102 4.102 3 N -0.107 5.107 4 N -0.209 5.209 5 C 0.128 3.872 6 N -0.316 5.316 7 C 0.027 3.973 8 C -0.072 4.072 9 C -0.186 4.186 10 C -0.186 4.186 11 C 0.000 4.000 12 C -0.553 4.553 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 O -0.138 6.138 21 H 0.108 0.892 22 H 0.119 0.881 23 H 0.103 0.897 24 H 0.253 0.747 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.817 -1.776 0.002 16.911 hybrid contribution 0.505 -2.353 -0.004 2.406 sum -16.312 -4.128 -0.002 16.826 Atomic orbital electron populations 1.20137 0.80759 1.04910 1.04438 1.27228 0.96784 0.79094 1.07048 1.74043 0.96247 1.25809 1.14644 1.74906 1.11048 1.05511 1.29423 1.23592 0.80248 0.88560 0.94827 1.43984 0.99780 1.08052 1.79830 1.21871 0.77012 0.95897 1.02540 1.20971 0.96281 0.94571 0.95371 1.21790 0.99511 1.00112 0.97235 1.21789 0.99516 1.00095 0.97240 1.19094 0.87490 0.95672 0.97743 1.21113 0.90526 0.92825 1.50790 0.92267 1.25003 0.98808 0.95139 0.95428 1.69946 1.17861 1.14936 1.50493 0.86697 0.81208 0.81786 0.78535 1.20311 1.21355 1.20307 1.84716 1.16436 1.38412 1.74216 0.89217 0.88086 0.89665 0.74697 0.91151 0.91159 0.95295 0.91139 0.93113 0.93105 0.91145 0.95299 0.96115 0.96107 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.31 10.51 36.01 0.38 0.06 16 2 C 0.11 1.50 8.48 -13.02 -0.11 1.39 16 3 N -0.26 -4.33 12.20 32.59 0.40 -3.93 16 4 N -0.35 -6.38 11.90 29.86 0.36 -6.03 16 5 C 0.43 6.94 9.17 -86.89 -0.80 6.14 16 6 N -0.67 -9.92 5.10 -62.17 -0.32 -10.24 16 7 C 0.15 2.49 4.90 -4.04 -0.02 2.47 16 8 C -0.07 -1.30 0.54 -154.50 -0.08 -1.38 16 9 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 10 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 11 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 12 C -0.51 -13.33 7.65 -34.44 -0.26 -13.59 16 13 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 16 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 O -0.26 -3.71 10.90 3.70 0.04 -3.67 16 21 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.41 5.35 6.29 -40.82 -0.26 5.09 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -30.66 291.60 -4.81 -35.47 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.89 Total: -0.21 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.51 Total: -6.43 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 1.17 Total: -45.42 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.66 -4.81 -35.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309090954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.378 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds