Wall clock time and date at job start Sun Mar 29 2020 22:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30071 * 126.21342 * 2 1 4 4 N 1.28655 * 109.54604 * 179.97438 * 3 2 1 5 5 C 1.31070 * 109.31416 * 0.02562 * 4 3 2 6 6 N 1.38256 * 126.37041 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99609 * 359.97229 * 6 5 4 8 8 C 1.53000 * 109.46729 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47478 * 299.99978 * 8 7 6 10 10 C 1.53003 * 109.47274 * 60.00391 * 8 7 6 11 11 C 1.53006 * 109.47039 * 180.02562 * 8 7 6 12 12 C 1.50699 * 109.47242 * 180.02562 * 11 8 7 13 13 H 1.07998 * 120.00133 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99950 * 180.02562 * 12 11 8 15 15 N 1.31509 * 119.99996 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99796 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46840 * 60.00218 * 16 14 12 18 18 H 1.48502 * 109.46809 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47172 * 299.99902 * 16 14 12 20 20 O 1.34582 * 107.26366 * 359.73096 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02398 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02499 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02480 * 1 2 3 24 24 H 0.96994 * 120.00572 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47108 * 299.99727 * 7 6 5 26 26 H 1.09001 * 109.47340 * 60.00541 * 7 6 5 27 27 H 1.09000 * 109.46902 * 59.99756 * 9 8 7 28 28 H 1.08996 * 109.47298 * 180.02562 * 9 8 7 29 29 H 1.09007 * 109.47016 * 300.00216 * 9 8 7 30 30 H 1.08994 * 109.47582 * 59.99633 * 10 8 7 31 31 H 1.09003 * 109.47218 * 180.02562 * 10 8 7 32 32 H 1.09006 * 109.46443 * 299.99066 * 10 8 7 33 33 H 1.09005 * 109.46561 * 300.00151 * 11 8 7 34 34 H 1.08999 * 109.47056 * 59.99691 * 11 8 7 35 35 H 0.97003 * 120.00453 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2755 1.0494 0.0000 4 7 3.5080 0.6804 0.0005 5 6 3.5685 -0.6289 0.0004 6 7 4.7184 -1.3964 0.0013 7 6 6.0320 -0.7478 0.0020 8 6 7.1279 -1.8154 0.0036 9 6 6.9889 -2.6872 1.2533 10 6 6.9911 -2.6887 -1.2452 11 6 8.4999 -1.1381 0.0050 12 6 9.5793 -2.1896 0.0060 13 1 9.3135 -3.2364 0.0052 14 6 10.9064 -1.8154 0.0079 15 7 11.2301 -0.5407 0.0083 16 14 12.2444 -3.1189 0.0098 17 1 12.1121 -3.9657 -1.2030 18 1 13.5759 -2.4614 0.0110 19 1 12.1088 -3.9657 1.2220 20 8 2.3031 -1.0872 0.0057 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 4.6555 -2.3643 0.0014 25 1 6.1309 -0.1264 -0.8880 26 1 6.1298 -0.1260 0.8920 27 1 6.0115 -3.1697 1.2527 28 1 7.7699 -3.4475 1.2546 29 1 7.0865 -2.0650 2.1430 30 1 7.0902 -2.0677 -2.1355 31 1 7.7716 -3.4496 -1.2439 32 1 6.0137 -3.1713 -1.2457 33 1 8.5991 -0.5167 -0.8851 34 1 8.5971 -0.5162 0.8949 35 1 12.1637 -0.2774 0.0100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309090954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:46 Heat of formation + Delta-G solvation = 3.260101 kcal Electronic energy + Delta-G solvation = -16940.290082 eV Core-core repulsion = 14167.095760 eV Total energy + Delta-G solvation = -2773.194322 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.97794 -39.54389 -37.05366 -36.21951 -34.33605 -32.78849 -29.28620 -28.38983 -27.99471 -27.59342 -25.08963 -23.46041 -23.34622 -20.02487 -19.10618 -18.49064 -18.35999 -17.22242 -16.54024 -16.35320 -15.79925 -15.18662 -14.86209 -14.40008 -14.37594 -13.94550 -13.86397 -13.49602 -13.36423 -12.92063 -12.78077 -12.73702 -12.67010 -12.33965 -12.26835 -12.04125 -11.80289 -11.78722 -11.36397 -11.05762 -10.89851 -10.49511 -9.19320 -8.13126 -6.20743 0.44126 0.69659 1.44044 1.45444 1.52704 1.55129 2.43753 2.49684 3.21707 3.53227 3.74101 3.88692 4.02714 4.10632 4.20629 4.55282 4.64157 4.66677 4.67831 4.70953 4.85917 4.92302 5.10301 5.11091 5.17110 5.38261 5.49779 5.50318 5.55284 5.67727 5.78115 5.90409 6.21528 6.31051 6.93925 7.46944 7.53437 8.99078 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.066019 B = 0.004401 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.019565 B = 6360.721614 C = 6583.069312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.138 3.862 3 N -0.306 5.306 4 N -0.389 5.389 5 C 0.423 3.577 6 N -0.657 5.657 7 C 0.164 3.836 8 C -0.062 4.062 9 C -0.124 4.124 10 C -0.124 4.124 11 C 0.041 3.959 12 C -0.516 4.516 13 H 0.073 0.927 14 C -0.003 4.003 15 N -0.937 5.937 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.292 1.292 19 H -0.267 1.267 20 O -0.253 6.253 21 H 0.113 0.887 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.426 0.574 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.066 0.934 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.639 -5.457 -0.019 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.078 4.078 3 N -0.150 5.150 4 N -0.247 5.247 5 C 0.120 3.880 6 N -0.307 5.307 7 C 0.042 3.958 8 C -0.063 4.063 9 C -0.182 4.182 10 C -0.181 4.181 11 C 0.003 3.997 12 C -0.554 4.554 13 H 0.091 0.909 14 C -0.200 4.200 15 N -0.578 5.578 16 Si 0.782 3.218 17 H -0.192 1.192 18 H -0.218 1.218 19 H -0.192 1.192 20 O -0.134 6.134 21 H 0.131 0.869 22 H 0.134 0.866 23 H 0.129 0.871 24 H 0.267 0.733 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.006 -3.984 -0.015 19.420 hybrid contribution 1.014 -1.629 -0.001 1.918 sum -17.993 -5.613 -0.016 18.848 Atomic orbital electron populations 1.20580 0.76340 1.06895 1.06513 1.28557 0.98576 0.77961 1.02679 1.73993 0.96121 1.27273 1.17650 1.74813 1.12457 1.06823 1.30596 1.23519 0.80994 0.88289 0.95215 1.43597 0.98733 1.08292 1.80116 1.21438 0.77840 0.95140 1.01368 1.20738 0.93482 0.94882 0.97197 1.21725 1.01231 0.99371 0.95824 1.21725 1.01239 0.99354 0.95830 1.18958 0.90876 0.94978 0.94841 1.21551 0.90996 0.93817 1.49003 0.90935 1.25908 1.01567 0.97051 0.95459 1.70102 1.18124 1.17170 1.52407 0.85626 0.77893 0.79162 0.79121 1.19214 1.21774 1.19203 1.84750 1.15757 1.38732 1.74176 0.86865 0.86587 0.87099 0.73294 0.92460 0.92476 0.91551 0.92294 0.94039 0.94024 0.92298 0.91553 0.99100 0.99092 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 71.24 0.75 0.27 16 2 C 0.14 3.33 8.48 88.37 0.75 4.07 16 3 N -0.31 -9.93 12.20 -165.26 -2.02 -11.94 16 4 N -0.39 -14.18 11.90 -173.50 -2.06 -16.24 16 5 C 0.42 13.19 9.17 179.04 1.64 14.83 16 6 N -0.66 -18.54 5.10 -460.81 -2.35 -20.89 16 7 C 0.16 5.57 4.90 86.38 0.42 6.00 16 8 C -0.06 -2.26 0.54 -52.18 -0.03 -2.29 16 9 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 10 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 11 C 0.04 2.02 4.04 29.85 0.12 2.14 16 12 C -0.52 -26.98 7.65 25.60 0.20 -26.78 16 13 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 14 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 15 N -0.94 -56.16 13.29 21.45 0.28 -55.88 16 16 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 O -0.25 -6.73 10.90 -9.66 -0.11 -6.83 16 21 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.43 9.73 6.29 -92.71 -0.58 9.15 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 28 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 32 H 0.07 1.65 6.86 -2.38 -0.02 1.63 16 33 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -68.68 291.60 1.76 -66.92 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.51 Total: 8.23 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.47 Total: -8.33 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -6.15 Total: -104.96 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.11 Total: -6.83 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.68 1.76 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309090954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.179 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds