Wall clock time and date at job start Sun Mar 29 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31126 * 126.55484 * 2 1 4 4 C 1.34492 * 105.61910 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.29014 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47222 * 345.05561 * 5 4 3 7 7 C 1.53007 * 109.47030 * 105.05148 * 5 4 3 8 8 N 1.46897 * 109.47351 * 225.05083 * 5 4 3 9 9 C 1.46899 * 111.00236 * 154.99790 * 8 5 4 10 10 C 1.52996 * 109.47570 * 180.02562 * 9 8 5 11 11 C 1.52993 * 109.47304 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47222 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00119 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00151 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00033 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00153 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46997 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47493 * 119.99867 * 16 14 12 19 19 H 1.48505 * 109.47222 * 240.00234 * 16 14 12 20 20 N 1.29948 * 107.42516 * 0.02562 * 4 3 2 21 21 O 1.21303 * 110.24669 * 359.97438 * 20 4 3 22 22 H 1.09003 * 109.47573 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47036 * 300.01785 * 1 2 3 24 24 H 1.09003 * 109.47076 * 60.01708 * 1 2 3 25 25 H 1.08994 * 109.46707 * 180.02562 * 7 5 4 26 26 H 1.08997 * 109.46766 * 299.99897 * 7 5 4 27 27 H 1.08998 * 109.46781 * 60.00142 * 7 5 4 28 28 H 1.00905 * 111.00057 * 31.04798 * 8 5 4 29 29 H 1.09003 * 109.47514 * 300.00685 * 9 8 5 30 30 H 1.09009 * 109.46799 * 60.00346 * 9 8 5 31 31 H 1.09006 * 109.47324 * 300.00259 * 10 9 8 32 32 H 1.08995 * 109.47076 * 60.00177 * 10 9 8 33 33 H 1.08999 * 109.47345 * 299.99486 * 11 10 9 34 34 H 1.09001 * 109.47552 * 60.00144 * 11 10 9 35 35 H 0.96999 * 120.00225 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 0.0006 5 6 4.8111 1.3885 0.0003 6 1 4.5792 2.4199 -0.2655 7 6 5.4425 1.3506 1.3935 8 7 5.7527 0.8303 -0.9793 9 6 6.6950 1.8555 -1.4474 10 6 7.6570 1.2380 -2.4643 11 6 8.6386 2.3056 -2.9513 12 6 9.5858 1.6975 -3.9534 13 1 9.4967 0.6539 -4.2163 14 6 10.5661 2.4736 -4.5346 15 7 10.6743 3.7447 -4.2148 16 14 11.7405 1.7197 -5.7762 17 1 11.4109 0.2835 -5.9606 18 1 11.6103 2.4285 -7.0746 19 1 13.1344 1.8474 -5.2801 20 7 3.4645 -0.7243 0.0003 21 8 2.3028 -1.0736 0.0002 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8899 24 1 -0.3633 0.5136 -0.8902 25 1 6.3587 1.9410 1.3933 26 1 4.7438 1.7649 2.1203 27 1 5.6744 0.3193 1.6593 28 1 5.2616 0.4099 -1.7541 29 1 6.1427 2.6691 -1.9177 30 1 7.2609 2.2428 -0.6000 31 1 8.2094 0.4243 -1.9943 32 1 7.0908 0.8511 -3.3115 33 1 8.0866 3.1196 -3.4212 34 1 9.2049 2.6923 -2.1039 35 1 11.3641 4.2906 -4.6234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309101311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:13 Heat of formation + Delta-G solvation = 50.083673 kcal Electronic energy + Delta-G solvation = -16362.089376 eV Core-core repulsion = 13590.925477 eV Total energy + Delta-G solvation = -2771.163900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.74369 -37.64505 -35.74844 -34.19471 -33.13312 -31.66584 -29.41272 -29.06473 -26.21834 -24.76362 -23.35259 -22.38200 -20.51429 -20.07208 -18.30990 -17.62813 -16.31352 -16.02681 -15.08050 -14.76564 -14.55055 -14.18429 -13.82870 -13.59500 -13.55329 -12.75837 -12.34069 -12.22583 -12.16026 -11.88658 -11.64046 -11.40825 -11.30343 -11.10259 -10.82119 -10.56666 -10.47726 -10.03001 -9.69545 -9.33869 -9.03400 -8.33601 -8.31165 -5.97892 -3.99781 1.00460 2.05251 2.64941 3.32933 3.34861 3.40221 3.45186 3.86728 4.30587 4.49541 4.73771 4.87402 4.88885 5.11516 5.20321 5.34635 5.38048 5.54211 5.64741 5.72611 5.78958 5.87583 5.89323 6.18103 6.32044 6.69750 6.72747 7.12837 7.21971 7.47577 7.70457 7.84689 8.02547 8.06448 8.45883 9.07554 9.64200 11.13628 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049689 B = 0.003604 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.371089 B = 7767.130013 C = 7966.280794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.169 3.831 3 N -0.481 5.481 4 C 0.169 3.831 5 C 0.174 3.826 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.678 5.678 9 C 0.058 3.942 10 C -0.106 4.106 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.359 5.359 21 O 0.077 5.923 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.340 0.660 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.665 -6.047 10.303 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.052 4.052 3 N -0.216 5.216 4 C -0.105 4.105 5 C 0.063 3.937 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.310 5.310 9 C -0.070 4.070 10 C -0.144 4.144 11 C -0.015 4.015 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 N -0.065 5.065 21 O 0.016 5.984 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.121 0.879 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.325 -6.221 10.746 22.971 hybrid contribution -0.042 0.215 -1.314 1.332 sum -19.368 -6.006 9.432 22.364 Atomic orbital electron populations 1.20360 0.80316 1.05514 1.05580 1.28841 0.98943 0.80970 0.96453 1.71873 1.00304 1.29060 1.20380 1.25960 0.94998 0.88436 1.01066 1.19847 0.83334 0.94385 0.96147 0.90827 1.21789 1.00910 1.03359 0.93333 1.60710 1.18844 1.33366 1.18117 1.22259 0.93848 0.92021 0.98839 1.21625 0.96749 1.00273 0.95801 1.19069 0.93128 0.93316 0.96030 1.21296 1.14409 0.96320 1.23609 0.92605 1.25033 0.97668 0.94865 0.96999 1.69977 1.33998 1.05958 1.43684 0.86536 0.80888 0.79420 0.81171 1.19716 1.21057 1.21003 1.74719 0.96508 1.15605 1.19644 1.85346 1.11687 1.35838 1.65480 0.88537 0.87984 0.87942 0.90751 0.92526 0.91495 0.84145 0.95347 0.90912 0.92361 0.93654 0.96760 0.96472 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.17 1.64 8.51 -13.06 -0.11 1.53 16 3 N -0.48 -6.18 11.55 -9.87 -0.11 -6.30 16 4 C 0.17 2.39 6.71 -156.37 -1.05 1.34 16 5 C 0.17 2.48 3.16 -68.86 -0.22 2.26 16 6 H 0.07 1.03 7.80 -51.93 -0.40 0.63 16 7 C -0.14 -1.73 9.40 37.16 0.35 -1.38 16 8 N -0.68 -10.88 6.30 -107.95 -0.68 -11.56 16 9 C 0.06 1.04 5.48 -3.83 -0.02 1.02 16 10 C -0.11 -2.28 5.41 -26.74 -0.14 -2.42 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 N -0.36 -5.18 12.15 30.90 0.38 -4.80 16 21 O 0.08 0.91 11.31 18.10 0.20 1.11 16 22 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.93 7.45 -51.93 -0.39 0.55 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.34 5.50 8.35 -39.29 -0.33 5.17 16 29 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 30 H 0.07 1.28 7.44 -51.92 -0.39 0.89 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -32.99 302.60 -6.57 -39.57 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.27 Total: -2.09 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.37 Total: -10.90 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.32 Total: -49.30 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.11 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.99 -6.57 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309101311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.652 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds