Wall clock time and date at job start Sun Mar 29 2020 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31126 * 126.55484 * 2 1 4 4 C 1.34492 * 105.61910 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.29014 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47222 * 345.05561 * 5 4 3 7 7 C 1.53007 * 109.47030 * 105.05148 * 5 4 3 8 8 N 1.46897 * 109.47351 * 225.05083 * 5 4 3 9 9 C 1.46899 * 111.00236 * 154.99790 * 8 5 4 10 10 C 1.52996 * 109.47570 * 180.02562 * 9 8 5 11 11 C 1.52993 * 109.47304 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47222 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00119 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00151 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00033 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00153 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46997 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47493 * 119.99867 * 16 14 12 19 19 H 1.48505 * 109.47222 * 240.00234 * 16 14 12 20 20 N 1.29948 * 107.42516 * 0.02562 * 4 3 2 21 21 O 1.21303 * 110.24669 * 359.97438 * 20 4 3 22 22 H 1.09003 * 109.47573 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47036 * 300.01785 * 1 2 3 24 24 H 1.09003 * 109.47076 * 60.01708 * 1 2 3 25 25 H 1.08994 * 109.46707 * 180.02562 * 7 5 4 26 26 H 1.08997 * 109.46766 * 299.99897 * 7 5 4 27 27 H 1.08998 * 109.46781 * 60.00142 * 7 5 4 28 28 H 1.00905 * 111.00057 * 31.04798 * 8 5 4 29 29 H 1.09003 * 109.47514 * 300.00685 * 9 8 5 30 30 H 1.09009 * 109.46799 * 60.00346 * 9 8 5 31 31 H 1.09006 * 109.47324 * 300.00259 * 10 9 8 32 32 H 1.08995 * 109.47076 * 60.00177 * 10 9 8 33 33 H 1.08999 * 109.47345 * 299.99486 * 11 10 9 34 34 H 1.09001 * 109.47552 * 60.00144 * 11 10 9 35 35 H 0.96999 * 120.00225 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 0.0006 5 6 4.8111 1.3885 0.0003 6 1 4.5792 2.4199 -0.2655 7 6 5.4425 1.3506 1.3935 8 7 5.7527 0.8303 -0.9793 9 6 6.6950 1.8555 -1.4474 10 6 7.6570 1.2380 -2.4643 11 6 8.6386 2.3056 -2.9513 12 6 9.5858 1.6975 -3.9534 13 1 9.4967 0.6539 -4.2163 14 6 10.5661 2.4736 -4.5346 15 7 10.6743 3.7447 -4.2148 16 14 11.7405 1.7197 -5.7762 17 1 11.4109 0.2835 -5.9606 18 1 11.6103 2.4285 -7.0746 19 1 13.1344 1.8474 -5.2801 20 7 3.4645 -0.7243 0.0003 21 8 2.3028 -1.0736 0.0002 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8899 24 1 -0.3633 0.5136 -0.8902 25 1 6.3587 1.9410 1.3933 26 1 4.7438 1.7649 2.1203 27 1 5.6744 0.3193 1.6593 28 1 5.2616 0.4099 -1.7541 29 1 6.1427 2.6691 -1.9177 30 1 7.2609 2.2428 -0.6000 31 1 8.2094 0.4243 -1.9943 32 1 7.0908 0.8511 -3.3115 33 1 8.0866 3.1196 -3.4212 34 1 9.2049 2.6923 -2.1039 35 1 11.3641 4.2906 -4.6234 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309101311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:12 Heat of formation + Delta-G solvation = 25.464715 kcal Electronic energy + Delta-G solvation = -16363.156934 eV Core-core repulsion = 13590.925477 eV Total energy + Delta-G solvation = -2772.231458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.68448 -38.86058 -36.85671 -35.77839 -34.49231 -33.26100 -30.89139 -29.68817 -27.95121 -26.03887 -24.45694 -23.92688 -22.04859 -21.36218 -19.25136 -18.68847 -18.39661 -17.29157 -16.57673 -16.12005 -15.99506 -15.34890 -15.06154 -14.48158 -14.18610 -14.09249 -13.81562 -13.63777 -13.47201 -13.03585 -12.93740 -12.82822 -12.58933 -12.45990 -12.40270 -12.19775 -12.12346 -11.57141 -11.42630 -11.16048 -10.88857 -10.57038 -9.62190 -8.21627 -6.32505 0.16491 1.09630 1.39064 1.39457 1.53147 1.94494 2.38562 2.44190 2.83886 3.11507 3.26947 3.79709 4.04640 4.18140 4.21949 4.34653 4.49118 4.60630 4.63860 4.65530 4.68644 4.78333 4.91644 4.97713 5.06547 5.13687 5.15585 5.21657 5.49661 5.71727 5.82894 5.84919 6.15033 6.24931 6.84075 7.17131 7.36676 8.90509 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049689 B = 0.003604 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.371089 B = 7767.130013 C = 7966.280794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.185 3.815 3 N -0.510 5.510 4 C 0.157 3.843 5 C 0.174 3.826 6 H 0.075 0.925 7 C -0.129 4.129 8 N -0.679 5.679 9 C 0.073 3.927 10 C -0.092 4.092 11 C 0.026 3.974 12 C -0.544 4.544 13 H 0.057 0.943 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.277 1.277 20 N -0.385 5.385 21 O 0.077 5.923 22 H 0.123 0.877 23 H 0.120 0.880 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.340 0.660 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.046 0.954 33 H -0.007 1.007 34 H -0.004 1.004 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.949 -6.949 10.244 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 N -0.244 5.244 4 C -0.116 4.116 5 C 0.063 3.937 6 H 0.093 0.907 7 C -0.188 4.188 8 N -0.311 5.311 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.076 0.924 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 N -0.092 5.092 21 O 0.016 5.984 22 H 0.141 0.859 23 H 0.139 0.861 24 H 0.135 0.865 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.011 0.989 34 H 0.014 0.986 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.633 -7.126 10.699 24.310 hybrid contribution 0.234 0.500 -1.267 1.381 sum -20.400 -6.627 9.432 23.431 Atomic orbital electron populations 1.20776 0.76137 1.07797 1.06980 1.29948 1.00590 0.79584 0.93288 1.71875 1.00105 1.30266 1.22178 1.25901 0.95430 0.88534 1.01784 1.19851 0.83407 0.94403 0.96045 0.90684 1.21745 1.01250 1.02871 0.92924 1.60635 1.19425 1.32779 1.18253 1.21971 0.93637 0.92075 0.97926 1.21367 0.96364 0.98565 0.96717 1.18957 0.93479 0.93937 0.94744 1.21718 1.15362 0.96641 1.24477 0.92435 1.25985 0.99512 0.95297 0.99067 1.70097 1.34890 1.07399 1.44909 0.85386 0.78347 0.78844 0.78394 1.18767 1.20219 1.20219 1.74696 0.97963 1.15842 1.20743 1.85305 1.11232 1.36316 1.65534 0.85884 0.86147 0.86498 0.90688 0.90944 0.92416 0.84253 0.95248 0.90654 0.92795 0.93478 0.98895 0.98608 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 71.23 0.75 0.47 16 2 C 0.19 3.26 8.51 88.38 0.75 4.02 16 3 N -0.51 -12.50 11.55 -303.21 -3.50 -16.01 16 4 C 0.16 4.35 6.71 138.46 0.93 5.28 16 5 C 0.17 4.87 3.16 44.17 0.14 5.01 16 6 H 0.08 2.08 7.80 -2.39 -0.02 2.06 16 7 C -0.13 -3.23 9.40 71.98 0.68 -2.55 16 8 N -0.68 -21.65 6.30 -495.44 -3.12 -24.77 16 9 C 0.07 2.58 5.48 86.30 0.47 3.06 16 10 C -0.09 -3.98 5.41 30.59 0.17 -3.81 16 11 C 0.03 1.43 4.97 29.85 0.15 1.58 16 12 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 15 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 16 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 N -0.39 -10.90 12.15 -60.31 -0.73 -11.64 16 21 O 0.08 1.71 11.31 74.83 0.85 2.56 16 22 H 0.12 -0.04 8.14 -2.39 -0.02 -0.05 16 23 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.07 1.84 7.45 -2.39 -0.02 1.82 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.34 10.92 8.35 -89.69 -0.75 10.17 16 29 H 0.03 1.04 8.06 -2.39 -0.02 1.02 16 30 H 0.08 2.65 7.44 -2.38 -0.02 2.63 16 31 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -71.35 302.60 0.86 -70.49 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.33 Total: 7.68 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 4.73 Total: -18.23 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -7.07 Total: -109.72 kcal Atomic # 8 Polarization: 1.71 SS G_CDS: 0.85 Total: 2.56 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.35 0.86 -70.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309101311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.954 kcal (2) G-P(sol) polarization free energy of solvation -71.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds