Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31128 * 126.55302 * 2 1 4 4 C 1.34500 * 105.61613 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.28605 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47304 * 15.00149 * 5 4 3 7 7 C 1.53006 * 109.47184 * 255.00205 * 5 4 3 8 8 N 1.46902 * 109.46927 * 135.00894 * 5 4 3 9 9 C 1.46904 * 110.99949 * 205.00218 * 8 5 4 10 10 C 1.52997 * 109.46907 * 179.97438 * 9 8 5 11 11 C 1.53001 * 109.46838 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47038 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00009 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99892 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47187 * 89.99442 * 16 14 12 18 18 H 1.48495 * 109.47126 * 209.99713 * 16 14 12 19 19 H 1.48504 * 109.46776 * 329.99741 * 16 14 12 20 20 N 1.29944 * 107.42179 * 0.24589 * 4 3 2 21 21 O 1.21301 * 110.25537 * 359.57652 * 20 4 3 22 22 H 1.08993 * 109.47001 * 89.99506 * 1 2 3 23 23 H 1.08999 * 109.47056 * 210.00370 * 1 2 3 24 24 H 1.09001 * 109.46727 * 329.99705 * 1 2 3 25 25 H 1.09001 * 109.46801 * 300.00442 * 7 5 4 26 26 H 1.09001 * 109.46998 * 60.00038 * 7 5 4 27 27 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 28 28 H 1.00900 * 110.99581 * 328.94974 * 8 5 4 29 29 H 1.09002 * 109.46523 * 299.99312 * 9 8 5 30 30 H 1.08997 * 109.46880 * 59.99279 * 9 8 5 31 31 H 1.08993 * 109.47205 * 299.99428 * 10 9 8 32 32 H 1.09008 * 109.47279 * 59.99922 * 10 9 8 33 33 H 1.09006 * 109.47384 * 300.00037 * 11 10 9 34 34 H 1.08997 * 109.47256 * 60.00031 * 11 10 9 35 35 H 0.96997 * 120.00102 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5727 -0.0006 5 6 4.8112 1.3886 -0.0014 6 1 4.5795 2.4199 0.2646 7 6 5.4414 1.3506 -1.3951 8 7 5.7536 0.8302 0.9774 9 6 6.6963 1.8555 1.4448 10 6 7.6590 1.2378 2.4608 11 6 8.6412 2.3055 2.9470 12 6 9.5900 1.6970 3.9474 13 1 9.5011 0.6533 4.2104 14 6 10.5709 2.4730 4.5277 15 7 10.6788 3.7441 4.2078 16 14 11.7474 1.7187 5.7671 17 1 12.9376 1.1840 5.0580 18 1 12.1750 2.7568 6.7389 19 1 11.0646 0.6154 6.4896 20 7 3.4645 -0.7242 -0.0062 21 8 2.3029 -1.0737 -0.0007 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 5.6731 0.3192 -1.6611 26 1 4.7421 1.7648 -2.1214 27 1 6.3581 1.9403 -1.3955 28 1 5.2631 0.4099 1.7525 29 1 7.2614 2.2427 0.5970 30 1 6.1443 2.6689 1.9155 31 1 7.0936 0.8509 3.3084 32 1 8.2111 0.4241 1.9903 33 1 9.2067 2.6922 2.0991 34 1 8.0896 3.1194 3.4174 35 1 11.3691 4.2899 4.6157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309101312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = 50.198413 kcal Electronic energy + Delta-G solvation = -16361.744973 eV Core-core repulsion = 13590.586049 eV Total energy + Delta-G solvation = -2771.158924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.74354 -37.64468 -35.74869 -34.19382 -33.13138 -31.66441 -29.41188 -29.06460 -26.21730 -24.76276 -23.35404 -22.38006 -20.51336 -20.07088 -18.31104 -17.63252 -16.31178 -16.02548 -15.07920 -14.76258 -14.55292 -14.18769 -13.82884 -13.59353 -13.53930 -12.75619 -12.34366 -12.22534 -12.15579 -11.88569 -11.64471 -11.41592 -11.30021 -11.09977 -10.80261 -10.56224 -10.50530 -10.03137 -9.69192 -9.33513 -9.04674 -8.33309 -8.30988 -5.97681 -3.99643 1.00342 2.05297 2.64836 3.34169 3.34962 3.40012 3.43992 3.87093 4.30710 4.49599 4.73958 4.87264 4.87828 5.11666 5.20688 5.34514 5.38166 5.54497 5.64810 5.72791 5.78976 5.87733 5.89345 6.18111 6.32085 6.69795 6.72805 7.12856 7.21971 7.47633 7.70306 7.84795 8.02666 8.06376 8.45967 9.07451 9.64246 11.13820 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049729 B = 0.003603 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.912698 B = 7768.912096 C = 7967.508823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.481 5.481 4 C 0.169 3.831 5 C 0.174 3.826 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.678 5.678 9 C 0.058 3.942 10 C -0.106 4.106 11 C 0.023 3.977 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.359 5.359 21 O 0.077 5.923 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.340 0.660 29 H 0.072 0.928 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 -6.032 -10.274 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.052 4.052 3 N -0.216 5.216 4 C -0.105 4.105 5 C 0.063 3.937 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.310 5.310 9 C -0.070 4.070 10 C -0.145 4.145 11 C -0.015 4.015 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.065 5.065 21 O 0.016 5.984 22 H 0.118 0.882 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.328 -6.199 -10.720 22.955 hybrid contribution -0.038 0.194 1.302 1.317 sum -19.366 -6.005 -9.419 22.356 Atomic orbital electron populations 1.20366 0.80315 1.05846 1.05297 1.28842 0.98944 0.80968 0.96468 1.71894 1.00304 1.29051 1.20328 1.25957 0.95008 0.88449 1.01076 1.19846 0.83328 0.94385 0.96150 0.90822 1.21791 1.00911 1.03366 0.93329 1.60714 1.18810 1.33365 1.18151 1.22258 0.93841 0.92023 0.98845 1.21627 0.96744 1.00275 0.95807 1.19065 0.93103 0.93306 0.96028 1.21258 1.14386 0.96281 1.23795 0.92660 1.25031 0.97664 0.94855 0.96987 1.69966 1.33950 1.05948 1.43760 0.86587 0.81304 0.78885 0.81195 1.20641 1.21257 1.19884 1.74717 0.96512 1.15611 1.19611 1.85341 1.11682 1.35820 1.65519 0.88155 0.88446 0.87818 0.91500 0.92525 0.90746 0.84145 0.90913 0.95344 0.93653 0.92361 0.96484 0.96760 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.17 1.64 8.51 -13.06 -0.11 1.53 16 3 N -0.48 -6.18 11.55 -9.86 -0.11 -6.29 16 4 C 0.17 2.39 6.71 -156.37 -1.05 1.34 16 5 C 0.17 2.48 3.16 -68.86 -0.22 2.26 16 6 H 0.07 1.03 7.80 -51.93 -0.41 0.63 16 7 C -0.14 -1.73 9.40 37.16 0.35 -1.38 16 8 N -0.68 -10.89 6.30 -107.95 -0.68 -11.57 16 9 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 N -0.36 -5.17 12.15 30.90 0.38 -4.80 16 21 O 0.08 0.91 11.31 18.09 0.20 1.11 16 22 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.93 7.45 -51.93 -0.39 0.55 16 28 H 0.34 5.50 8.35 -39.29 -0.33 5.17 16 29 H 0.07 1.28 7.44 -51.93 -0.39 0.89 16 30 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -32.97 302.60 -6.57 -39.55 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.27 Total: -2.05 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.36 Total: -10.91 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.32 Total: -49.31 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.97 -6.57 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309101312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.746 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds