Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31128 * 126.55302 * 2 1 4 4 C 1.34500 * 105.61613 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.28605 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47304 * 15.00149 * 5 4 3 7 7 C 1.53006 * 109.47184 * 255.00205 * 5 4 3 8 8 N 1.46902 * 109.46927 * 135.00894 * 5 4 3 9 9 C 1.46904 * 110.99949 * 205.00218 * 8 5 4 10 10 C 1.52997 * 109.46907 * 179.97438 * 9 8 5 11 11 C 1.53001 * 109.46838 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47038 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00188 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00009 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99892 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47187 * 89.99442 * 16 14 12 18 18 H 1.48495 * 109.47126 * 209.99713 * 16 14 12 19 19 H 1.48504 * 109.46776 * 329.99741 * 16 14 12 20 20 N 1.29944 * 107.42179 * 0.24589 * 4 3 2 21 21 O 1.21301 * 110.25537 * 359.57652 * 20 4 3 22 22 H 1.08993 * 109.47001 * 89.99506 * 1 2 3 23 23 H 1.08999 * 109.47056 * 210.00370 * 1 2 3 24 24 H 1.09001 * 109.46727 * 329.99705 * 1 2 3 25 25 H 1.09001 * 109.46801 * 300.00442 * 7 5 4 26 26 H 1.09001 * 109.46998 * 60.00038 * 7 5 4 27 27 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 28 28 H 1.00900 * 110.99581 * 328.94974 * 8 5 4 29 29 H 1.09002 * 109.46523 * 299.99312 * 9 8 5 30 30 H 1.08997 * 109.46880 * 59.99279 * 9 8 5 31 31 H 1.08993 * 109.47205 * 299.99428 * 10 9 8 32 32 H 1.09008 * 109.47279 * 59.99922 * 10 9 8 33 33 H 1.09006 * 109.47384 * 300.00037 * 11 10 9 34 34 H 1.08997 * 109.47256 * 60.00031 * 11 10 9 35 35 H 0.96997 * 120.00102 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5727 -0.0006 5 6 4.8112 1.3886 -0.0014 6 1 4.5795 2.4199 0.2646 7 6 5.4414 1.3506 -1.3951 8 7 5.7536 0.8302 0.9774 9 6 6.6963 1.8555 1.4448 10 6 7.6590 1.2378 2.4608 11 6 8.6412 2.3055 2.9470 12 6 9.5900 1.6970 3.9474 13 1 9.5011 0.6533 4.2104 14 6 10.5709 2.4730 4.5277 15 7 10.6788 3.7441 4.2078 16 14 11.7474 1.7187 5.7671 17 1 12.9376 1.1840 5.0580 18 1 12.1750 2.7568 6.7389 19 1 11.0646 0.6154 6.4896 20 7 3.4645 -0.7242 -0.0062 21 8 2.3029 -1.0737 -0.0007 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 5.6731 0.3192 -1.6611 26 1 4.7421 1.7648 -2.1214 27 1 6.3581 1.9403 -1.3955 28 1 5.2631 0.4099 1.7525 29 1 7.2614 2.2427 0.5970 30 1 6.1443 2.6689 1.9155 31 1 7.0936 0.8509 3.3084 32 1 8.2111 0.4241 1.9903 33 1 9.2067 2.6922 2.0991 34 1 8.0896 3.1194 3.4174 35 1 11.3691 4.2899 4.6157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309101312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = 25.589861 kcal Electronic energy + Delta-G solvation = -16362.812080 eV Core-core repulsion = 13590.586049 eV Total energy + Delta-G solvation = -2772.226031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.68406 -38.86031 -36.85650 -35.77765 -34.49180 -33.25954 -30.89046 -29.68846 -27.95020 -26.03786 -24.45841 -23.92551 -22.04849 -21.36041 -19.25196 -18.68947 -18.39603 -17.29118 -16.57864 -16.11880 -15.99395 -15.35490 -15.05846 -14.47493 -14.16730 -14.09076 -13.81800 -13.63919 -13.47303 -13.04236 -12.94521 -12.80942 -12.58840 -12.47205 -12.39478 -12.21679 -12.12056 -11.56807 -11.42516 -11.17151 -10.88732 -10.56456 -9.62220 -8.21458 -6.32434 0.16480 1.09763 1.39155 1.40736 1.51916 1.94260 2.38630 2.44228 2.84024 3.11626 3.27065 3.79639 4.04612 4.18187 4.22016 4.34643 4.49113 4.58976 4.63418 4.66325 4.68276 4.78314 4.91759 4.99216 5.06569 5.13713 5.15559 5.21644 5.49472 5.71754 5.82852 5.84895 6.15083 6.24950 6.83973 7.17087 7.36682 8.90503 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049729 B = 0.003603 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.912698 B = 7768.912096 C = 7967.508823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.185 3.815 3 N -0.510 5.510 4 C 0.156 3.844 5 C 0.174 3.826 6 H 0.075 0.925 7 C -0.129 4.129 8 N -0.679 5.679 9 C 0.072 3.928 10 C -0.092 4.092 11 C 0.027 3.973 12 C -0.545 4.545 13 H 0.058 0.942 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.264 1.264 20 N -0.385 5.385 21 O 0.077 5.923 22 H 0.125 0.875 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.340 0.660 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.053 0.947 33 H -0.005 1.005 34 H -0.007 1.007 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.951 -6.975 -10.232 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 N -0.244 5.244 4 C -0.117 4.117 5 C 0.063 3.937 6 H 0.093 0.907 7 C -0.188 4.188 8 N -0.311 5.311 9 C -0.056 4.056 10 C -0.130 4.130 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 N -0.092 5.092 21 O 0.016 5.984 22 H 0.143 0.857 23 H 0.141 0.859 24 H 0.132 0.868 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.637 -7.146 -10.691 24.316 hybrid contribution 0.236 0.489 1.257 1.369 sum -20.401 -6.657 -9.434 23.442 Atomic orbital electron populations 1.20782 0.76137 1.07540 1.07274 1.29949 1.00593 0.79585 0.93293 1.71896 1.00103 1.30258 1.22152 1.25899 0.95439 0.88548 1.01793 1.19849 0.83402 0.94404 0.96049 0.90683 1.21748 1.01251 1.02877 0.92921 1.60640 1.19390 1.32775 1.18286 1.21970 0.93629 0.92078 0.97933 1.21369 0.96357 0.98566 0.96720 1.18954 0.93462 0.93932 0.94739 1.21693 1.15332 0.96644 1.24649 0.92415 1.25985 0.99517 0.95284 0.99051 1.70090 1.34828 1.07397 1.44978 0.85437 0.78830 0.78233 0.78492 1.19709 1.20546 1.18870 1.74694 0.97962 1.15843 1.20719 1.85300 1.11226 1.36287 1.65582 0.85738 0.85895 0.86849 0.92421 0.90946 0.90686 0.84250 0.90658 0.95247 0.93481 0.92782 0.98630 0.98899 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 71.24 0.75 0.47 16 2 C 0.19 3.26 8.51 88.38 0.75 4.01 16 3 N -0.51 -12.51 11.55 -303.17 -3.50 -16.01 16 4 C 0.16 4.34 6.71 138.46 0.93 5.27 16 5 C 0.17 4.87 3.16 44.17 0.14 5.01 16 6 H 0.08 2.08 7.80 -2.39 -0.02 2.06 16 7 C -0.13 -3.23 9.40 71.98 0.68 -2.56 16 8 N -0.68 -21.65 6.30 -495.44 -3.12 -24.77 16 9 C 0.07 2.58 5.48 86.30 0.47 3.06 16 10 C -0.09 -3.98 5.41 30.59 0.17 -3.81 16 11 C 0.03 1.45 4.97 29.85 0.15 1.60 16 12 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 15 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 16 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 20 N -0.39 -10.89 12.15 -60.30 -0.73 -11.62 16 21 O 0.08 1.71 11.31 74.78 0.85 2.56 16 22 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 23 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 24 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.84 7.45 -2.39 -0.02 1.82 16 28 H 0.34 10.92 8.35 -89.69 -0.75 10.17 16 29 H 0.08 2.65 7.44 -2.39 -0.02 2.63 16 30 H 0.03 1.04 8.05 -2.39 -0.02 1.02 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -71.35 302.60 0.86 -70.49 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.33 Total: 7.80 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.73 Total: -18.28 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -7.07 Total: -109.77 kcal Atomic # 8 Polarization: 1.71 SS G_CDS: 0.85 Total: 2.56 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.35 0.86 -70.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309101312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.082 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds