Wall clock time and date at job start Sun Mar 29 2020 22:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29952 * 126.29103 * 2 1 4 4 O 1.21297 * 110.25460 * 179.68373 * 3 2 1 5 5 C 1.33648 * 109.81110 * 0.47068 * 4 3 2 6 6 C 1.50695 * 126.55417 * 179.79688 * 5 4 3 7 7 H 1.08994 * 109.47229 * 164.68739 * 6 5 4 8 8 C 1.52993 * 109.47261 * 284.69176 * 6 5 4 9 9 N 1.46904 * 109.46760 * 44.69267 * 6 5 4 10 10 C 1.46899 * 111.00029 * 155.00092 * 9 6 5 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 6 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 N 1.31134 * 106.89380 * 359.53923 * 5 4 3 22 22 H 1.08997 * 109.46813 * 270.02413 * 1 2 3 23 23 H 1.08997 * 109.46981 * 30.02209 * 1 2 3 24 24 H 1.09003 * 109.46835 * 150.02396 * 1 2 3 25 25 H 1.09001 * 109.46997 * 179.97438 * 8 6 5 26 26 H 1.08999 * 109.47404 * 299.99809 * 8 6 5 27 27 H 1.09004 * 109.47538 * 59.99756 * 8 6 5 28 28 H 1.00908 * 110.99583 * 278.95004 * 9 6 5 29 29 H 1.09002 * 109.47043 * 299.99792 * 10 9 6 30 30 H 1.09001 * 109.47354 * 59.99854 * 10 9 6 31 31 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0474 0.0000 4 8 3.4419 0.7124 0.0063 5 6 3.5300 -0.6212 0.0007 6 6 4.7970 -1.4370 0.0011 7 1 4.5650 -2.4682 0.2673 8 6 5.4283 -1.3994 -1.3920 9 7 5.7386 -0.8785 0.9807 10 6 6.6808 -1.9036 1.4490 11 6 7.6435 -1.2856 2.4649 12 6 8.6244 -2.3533 2.9531 13 6 9.5731 -1.7445 3.9532 14 1 9.4849 -0.7003 4.2149 15 6 10.5530 -2.5205 4.5351 16 7 10.6601 -3.7921 4.2169 17 14 11.7293 -1.7655 5.7743 18 1 11.1616 -1.8981 7.1400 19 1 13.0350 -2.4701 5.7104 20 1 11.9265 -0.3281 5.4576 21 7 2.3030 -1.0841 0.0004 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 6.3449 -1.9892 -1.3915 26 1 4.7296 -1.8138 -2.1188 27 1 5.6603 -0.3682 -1.6581 28 1 6.2292 -0.0840 0.5983 29 1 6.1284 -2.7170 1.9196 30 1 7.2467 -2.2912 0.6018 31 1 8.1958 -0.4724 1.9939 32 1 7.0780 -0.8977 3.3121 33 1 8.0718 -3.1663 3.4241 34 1 9.1901 -2.7415 2.1060 35 1 11.3497 -4.3379 4.6259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309160852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:47 Heat of formation + Delta-G solvation = 48.019852 kcal Electronic energy + Delta-G solvation = -16378.420853 eV Core-core repulsion = 13607.167459 eV Total energy + Delta-G solvation = -2771.253394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.59878 -37.64478 -36.09272 -34.28209 -32.83162 -31.54840 -29.42342 -29.14406 -26.13885 -24.65305 -23.42039 -22.49230 -20.85780 -20.16007 -18.14535 -17.40053 -16.47438 -15.81531 -15.17867 -15.01177 -14.41334 -14.09931 -13.79272 -13.62317 -13.18651 -13.12365 -12.46916 -12.40716 -12.25928 -11.79096 -11.68921 -11.51212 -11.36536 -11.07108 -10.86524 -10.64664 -10.54028 -9.97828 -9.74783 -9.37813 -9.08847 -8.50010 -8.34953 -6.00454 -4.02530 1.10849 2.13763 2.77733 3.32581 3.38686 3.40447 3.42799 3.89953 4.31501 4.47631 4.68012 4.72333 4.98105 5.14198 5.20985 5.33128 5.35693 5.45374 5.46816 5.68324 5.71456 5.74681 5.87217 5.92977 6.21680 6.58464 6.65276 7.04784 7.10457 7.36573 7.66699 7.80475 7.99566 8.12594 8.42522 9.04603 9.61721 11.10968 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049533 B = 0.003617 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.145266 B = 7740.429501 C = 7937.249184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.391 5.391 4 O 0.084 5.916 5 C 0.211 3.789 6 C 0.174 3.826 7 H 0.124 0.876 8 C -0.182 4.182 9 N -0.685 5.685 10 C 0.060 3.940 11 C -0.108 4.108 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.489 5.489 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.350 0.650 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.630 5.115 -11.613 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.101 5.101 4 O 0.026 5.974 5 C -0.010 4.010 6 C 0.061 3.939 7 H 0.142 0.858 8 C -0.242 4.242 9 N -0.317 5.317 10 C -0.067 4.067 11 C -0.146 4.146 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.223 5.223 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.169 0.831 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.589 5.390 -11.035 20.640 hybrid contribution 1.380 0.188 0.009 1.393 sum -15.209 5.578 -11.025 19.596 Atomic orbital electron populations 1.20104 0.83126 1.04404 1.04246 1.25875 1.00512 0.83692 1.00893 1.74622 0.89592 1.24092 1.21763 1.85276 1.22000 1.24860 1.65223 1.28880 0.96593 0.81897 0.93656 1.20023 0.84809 0.96095 0.92986 0.85843 1.22534 1.02224 1.03657 0.95760 1.60473 1.21906 1.11015 1.38355 1.22238 0.92889 0.93540 0.98053 1.21646 0.96261 0.99851 0.96870 1.19061 0.93040 0.93410 0.96005 1.21250 1.14416 0.96285 1.23849 0.92637 1.25026 0.97669 0.94864 0.96940 1.69962 1.34111 1.05932 1.43588 0.86594 0.80381 0.79319 0.81719 1.20661 1.21259 1.19861 1.71866 0.99644 1.29480 1.21319 0.89390 0.89681 0.89165 0.89936 0.91298 0.91379 0.83112 0.90896 0.94733 0.93329 0.92405 0.96501 0.96677 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.16 2.08 8.22 -156.37 -1.28 0.79 16 3 N -0.39 -5.54 12.16 30.90 0.38 -5.17 16 4 O 0.08 1.17 11.31 18.09 0.20 1.37 16 5 C 0.21 2.76 7.35 -13.06 -0.10 2.67 16 6 C 0.17 1.97 3.13 -68.87 -0.22 1.76 16 7 H 0.12 1.38 7.80 -51.93 -0.40 0.97 16 8 C -0.18 -1.64 9.14 37.15 0.34 -1.30 16 9 N -0.69 -9.08 6.23 -107.96 -0.67 -9.76 16 10 C 0.06 0.93 5.48 -3.83 -0.02 0.91 16 11 C -0.11 -2.12 5.41 -26.74 -0.14 -2.27 16 12 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 13 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 N -0.49 -6.71 11.55 -9.86 -0.11 -6.82 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.72 7.45 -51.93 -0.39 0.33 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.35 4.24 8.47 -39.29 -0.33 3.91 16 29 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 30 H 0.03 0.50 7.44 -51.93 -0.39 0.12 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 302.71 15.07 4.56 4.56 Total: -1.00 -31.60 302.71 -6.80 -38.40 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.27 Total: -2.62 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.59 Total: -10.53 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.33 Total: -47.77 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.60 -6.80 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309160852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.416 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds