Wall clock time and date at job start Sun Mar 29 2020 22:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29952 * 126.29103 * 2 1 4 4 O 1.21297 * 110.25460 * 179.68373 * 3 2 1 5 5 C 1.33648 * 109.81110 * 0.47068 * 4 3 2 6 6 C 1.50695 * 126.55417 * 179.79688 * 5 4 3 7 7 H 1.08994 * 109.47229 * 164.68739 * 6 5 4 8 8 C 1.52993 * 109.47261 * 284.69176 * 6 5 4 9 9 N 1.46904 * 109.46760 * 44.69267 * 6 5 4 10 10 C 1.46899 * 111.00029 * 155.00092 * 9 6 5 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 6 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 N 1.31134 * 106.89380 * 359.53923 * 5 4 3 22 22 H 1.08997 * 109.46813 * 270.02413 * 1 2 3 23 23 H 1.08997 * 109.46981 * 30.02209 * 1 2 3 24 24 H 1.09003 * 109.46835 * 150.02396 * 1 2 3 25 25 H 1.09001 * 109.46997 * 179.97438 * 8 6 5 26 26 H 1.08999 * 109.47404 * 299.99809 * 8 6 5 27 27 H 1.09004 * 109.47538 * 59.99756 * 8 6 5 28 28 H 1.00908 * 110.99583 * 278.95004 * 9 6 5 29 29 H 1.09002 * 109.47043 * 299.99792 * 10 9 6 30 30 H 1.09001 * 109.47354 * 59.99854 * 10 9 6 31 31 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0474 0.0000 4 8 3.4419 0.7124 0.0063 5 6 3.5300 -0.6212 0.0007 6 6 4.7970 -1.4370 0.0011 7 1 4.5650 -2.4682 0.2673 8 6 5.4283 -1.3994 -1.3920 9 7 5.7386 -0.8785 0.9807 10 6 6.6808 -1.9036 1.4490 11 6 7.6435 -1.2856 2.4649 12 6 8.6244 -2.3533 2.9531 13 6 9.5731 -1.7445 3.9532 14 1 9.4849 -0.7003 4.2149 15 6 10.5530 -2.5205 4.5351 16 7 10.6601 -3.7921 4.2169 17 14 11.7293 -1.7655 5.7743 18 1 11.1616 -1.8981 7.1400 19 1 13.0350 -2.4701 5.7104 20 1 11.9265 -0.3281 5.4576 21 7 2.3030 -1.0841 0.0004 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 6.3449 -1.9892 -1.3915 26 1 4.7296 -1.8138 -2.1188 27 1 5.6603 -0.3682 -1.6581 28 1 6.2292 -0.0840 0.5983 29 1 6.1284 -2.7170 1.9196 30 1 7.2467 -2.2912 0.6018 31 1 8.1958 -0.4724 1.9939 32 1 7.0780 -0.8977 3.3121 33 1 8.0718 -3.1663 3.4241 34 1 9.1901 -2.7415 2.1060 35 1 11.3497 -4.3379 4.6259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309160852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:47 Heat of formation + Delta-G solvation = 25.261434 kcal Electronic energy + Delta-G solvation = -16379.407732 eV Core-core repulsion = 13607.167459 eV Total energy + Delta-G solvation = -2772.240273 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.59440 -38.72918 -37.07315 -35.95307 -34.34474 -32.96714 -30.66218 -29.99512 -27.74676 -25.80276 -24.41951 -24.08253 -22.06603 -21.57116 -19.15859 -18.52677 -18.36527 -17.02627 -16.56983 -16.33499 -15.92117 -15.09863 -14.84482 -14.49393 -14.44199 -13.95552 -13.90341 -13.68616 -13.34346 -13.23303 -12.98537 -12.68756 -12.58628 -12.44885 -12.31610 -12.26395 -12.05608 -11.51452 -11.36738 -11.13955 -10.90132 -10.52330 -9.57257 -8.18118 -6.28163 0.10715 1.17097 1.41924 1.42641 1.53788 1.80586 2.41420 2.47997 3.03096 3.15472 3.33005 3.82773 3.87517 4.13877 4.29632 4.39222 4.47886 4.57382 4.64507 4.65813 4.73794 4.78808 4.91195 5.02066 5.08580 5.12100 5.16471 5.28134 5.55036 5.79420 5.84757 5.90869 6.29112 6.32831 6.89276 7.13391 7.40936 8.93570 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049533 B = 0.003617 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.145266 B = 7740.429501 C = 7937.249184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.161 3.839 3 N -0.414 5.414 4 O 0.071 5.929 5 C 0.211 3.789 6 C 0.177 3.823 7 H 0.127 0.873 8 C -0.175 4.175 9 N -0.691 5.691 10 C 0.076 3.924 11 C -0.095 4.095 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.962 3.038 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.264 1.264 21 N -0.506 5.506 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.357 0.643 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.048 0.952 33 H -0.008 1.008 34 H -0.003 1.003 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 5.845 -11.968 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 N -0.126 5.126 4 O 0.017 5.983 5 C -0.010 4.010 6 C 0.065 3.935 7 H 0.144 0.856 8 C -0.234 4.234 9 N -0.324 5.324 10 C -0.053 4.053 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.786 3.214 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.188 1.188 21 N -0.241 5.241 22 H 0.118 0.882 23 H 0.118 0.882 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.177 0.823 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.060 6.135 -11.402 21.417 hybrid contribution 1.472 -0.057 0.106 1.477 sum -15.588 6.078 -11.296 20.187 Atomic orbital electron populations 1.20348 0.80232 1.05881 1.05450 1.26689 1.02212 0.83012 0.99257 1.74614 0.89807 1.24909 1.23269 1.85246 1.22189 1.25180 1.65715 1.29187 0.97034 0.81803 0.92970 1.20100 0.83843 0.95679 0.93881 0.85562 1.22484 1.02415 1.04326 0.94213 1.60289 1.21611 1.10747 1.39772 1.21905 0.92513 0.93459 0.97380 1.21390 0.95886 0.98370 0.97692 1.18964 0.93426 0.94108 0.94742 1.21726 1.15186 0.96616 1.24575 0.92400 1.25942 0.99556 0.95303 0.98987 1.70083 1.34998 1.07329 1.44890 0.85496 0.77982 0.78823 0.79050 1.20002 1.20715 1.18789 1.71893 1.00053 1.30097 1.22085 0.88166 0.88178 0.87709 0.89307 0.90315 0.90763 0.82265 0.91347 0.93489 0.92620 0.93331 0.98938 0.98429 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.51 71.24 0.75 -0.12 16 2 C 0.16 3.91 8.22 138.46 1.14 5.04 16 3 N -0.41 -11.39 12.16 -60.29 -0.73 -12.12 16 4 O 0.07 1.92 11.31 74.80 0.85 2.77 16 5 C 0.21 5.31 7.35 88.38 0.65 5.96 16 6 C 0.18 3.78 3.13 44.16 0.14 3.92 16 7 H 0.13 2.64 7.80 -2.39 -0.02 2.62 16 8 C -0.18 -2.79 9.14 71.98 0.66 -2.13 16 9 N -0.69 -17.42 6.23 -495.47 -3.09 -20.51 16 10 C 0.08 2.27 5.48 86.30 0.47 2.74 16 11 C -0.10 -3.71 5.41 30.59 0.17 -3.55 16 12 C 0.03 1.29 4.97 29.84 0.15 1.44 16 13 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 17 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 N -0.51 -13.33 11.55 -303.16 -3.50 -16.83 16 22 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 1.34 7.45 -2.39 -0.02 1.32 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.36 8.12 8.47 -89.69 -0.76 7.36 16 29 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 30 H 0.05 1.30 7.44 -2.39 -0.02 1.28 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -67.51 302.71 0.97 -66.54 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.32 Total: 6.68 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.82 Total: -16.72 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -7.04 Total: -105.46 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.85 Total: 2.77 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -67.51 0.97 -66.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309160852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.803 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds