Wall clock time and date at job start Sun Mar 29 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47487 * 2 1 4 4 N 1.46900 * 109.47432 * 119.99986 * 2 1 3 5 5 C 1.46898 * 111.00102 * 275.00065 * 4 2 1 6 6 C 1.53002 * 109.47499 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.46985 * 59.99370 * 6 5 4 8 8 O 1.42903 * 109.46596 * 300.00068 * 6 5 4 9 9 C 1.50699 * 109.47344 * 179.97438 * 6 5 4 10 10 H 1.07996 * 120.00152 * 0.02562 * 9 6 5 11 11 C 1.37880 * 119.99876 * 179.97438 * 9 6 5 12 12 N 1.31509 * 119.99877 * 0.02562 * 11 9 6 13 13 Si 1.86792 * 119.99856 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47088 * 60.00651 * 13 11 9 15 15 H 1.48499 * 109.47233 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47338 * 300.00355 * 13 11 9 17 17 C 1.50700 * 109.47005 * 239.99784 * 2 1 3 18 18 C 1.39870 * 126.04185 * 279.97789 * 17 2 1 19 19 N 1.30839 * 108.19862 * 180.02562 * 18 17 2 20 20 N 1.40079 * 108.20849 * 359.97438 * 19 18 17 21 21 C 1.46502 * 126.03442 * 179.97438 * 20 19 18 22 22 C 1.34948 * 107.92564 * 0.02562 * 20 19 18 23 23 H 1.09003 * 109.47575 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47245 * 299.99898 * 1 2 3 25 25 H 1.08996 * 109.47540 * 59.99590 * 1 2 3 26 26 H 1.00904 * 110.99934 * 38.94946 * 4 2 1 27 27 H 1.08995 * 109.47113 * 299.99759 * 5 4 2 28 28 H 1.09001 * 109.47517 * 59.99441 * 5 4 2 29 29 H 0.96700 * 114.00182 * 299.98839 * 8 6 5 30 30 H 0.97003 * 119.99812 * 179.97438 * 12 11 9 31 31 H 1.07997 * 125.89658 * 359.97438 * 18 17 2 32 32 H 1.09008 * 109.47064 * 269.99643 * 21 20 19 33 33 H 1.08998 * 109.47431 * 29.99992 * 21 20 19 34 34 H 1.08999 * 109.46741 * 150.00314 * 21 20 19 35 35 H 1.08007 * 126.12251 * 180.26869 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5745 7 1 3.5904 -0.9272 3.3691 8 8 1.7079 -1.6126 3.8740 9 6 2.6602 0.4058 4.7514 10 1 2.3649 1.4381 4.6356 11 6 3.0955 -0.0535 5.9764 12 7 3.4545 -1.3107 6.1176 13 14 3.1768 1.1105 7.4351 14 1 1.8214 1.6488 7.7150 15 1 3.6743 0.3770 8.6266 16 1 4.0999 2.2312 7.1233 17 6 2.0322 -0.7105 -1.2304 18 6 2.1218 -2.0957 -1.4020 19 7 2.6029 -2.3293 -2.5960 20 7 2.8345 -1.0984 -3.2232 21 6 3.3717 -0.9062 -4.5726 22 6 2.4765 -0.1209 -2.3645 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.4495 -1.4979 1.4101 27 1 2.7588 1.0461 2.1182 28 1 1.0871 0.6164 2.5525 29 1 0.8021 -1.3350 4.0677 30 1 3.7612 -1.6337 6.9793 31 1 1.8428 -2.8432 -0.6742 32 1 4.4589 -0.8434 -4.5253 33 1 3.0834 -1.7482 -5.2018 34 1 2.9725 0.0162 -4.9945 35 1 2.5303 0.9416 -2.5509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309162181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:11 Heat of formation + Delta-G solvation = 24.948674 kcal Electronic energy + Delta-G solvation = -16807.038836 eV Core-core repulsion = 14034.785001 eV Total energy + Delta-G solvation = -2772.253835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04306 -37.05006 -35.08865 -32.94219 -32.07127 -30.85424 -29.01845 -27.25833 -26.54038 -24.14797 -22.32589 -21.04910 -20.26162 -19.64745 -16.90283 -16.76613 -15.41935 -15.05812 -14.54412 -14.48174 -14.27561 -14.06708 -13.74515 -13.10439 -12.83625 -12.77002 -12.56504 -12.36045 -12.18033 -11.47594 -11.25529 -11.02314 -10.92640 -10.77690 -10.72677 -10.27520 -10.05593 -9.26661 -8.97742 -8.53075 -8.25846 -8.09585 -7.63389 -5.96028 -4.14387 2.00962 2.61663 3.02662 3.31388 3.36857 3.38316 4.39925 4.50066 4.83485 4.99674 5.02724 5.19303 5.24711 5.30975 5.44799 5.46976 5.59997 5.83220 5.87549 6.08254 6.21622 6.25195 6.36749 6.46830 6.52293 6.84428 6.95329 7.09844 7.65038 7.80832 7.85932 7.95584 8.09246 8.29569 8.89364 9.43417 9.62948 11.08182 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.004459 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.692296 B = 6277.337590 C = 6330.678717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.157 3.843 3 H 0.075 0.925 4 N -0.678 5.678 5 C 0.038 3.962 6 C 0.232 3.768 7 H 0.063 0.937 8 O -0.565 6.565 9 C -0.574 4.574 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.858 5.858 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.205 4.205 18 C 0.072 3.928 19 N -0.307 5.307 20 N -0.385 5.385 21 C 0.106 3.894 22 C 0.045 3.955 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.343 0.657 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.340 0.660 30 H 0.260 0.740 31 H 0.181 0.819 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 3.415 -17.516 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.045 3.955 3 H 0.093 0.907 4 N -0.309 5.309 5 C -0.091 4.091 6 C 0.174 3.826 7 H 0.081 0.919 8 O -0.366 6.366 9 C -0.612 4.612 10 H 0.072 0.928 11 C -0.127 4.127 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.217 4.217 18 C -0.115 4.115 19 N -0.128 5.128 20 N -0.168 5.168 21 C -0.036 4.036 22 C -0.100 4.100 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.162 0.838 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.183 0.817 30 H 0.070 0.930 31 H 0.198 0.802 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.354 2.122 -18.654 18.921 hybrid contribution -1.490 1.879 1.706 2.943 sum -3.844 4.001 -16.947 17.833 Atomic orbital electron populations 1.22470 0.97373 1.01984 1.01454 1.19715 0.91472 0.96415 0.87871 0.90680 1.60493 1.56962 1.10045 1.03385 1.22849 0.98594 0.95717 0.91981 1.19415 0.90254 0.84919 0.88013 0.91920 1.86594 1.21470 1.36559 1.92022 1.21609 1.47477 0.96650 0.95461 0.92801 1.25030 0.94055 0.94789 0.98781 1.70074 1.41169 1.13928 1.24191 0.86743 0.78439 0.81085 0.82106 1.20226 1.21224 1.20187 1.20070 1.11395 0.93522 0.96704 1.23699 0.97673 0.96311 0.93793 1.77323 1.22878 1.03220 1.09405 1.48358 1.50940 1.04079 1.13416 1.21748 0.99275 1.03167 0.79392 1.22188 1.01519 0.95105 0.91221 0.92523 0.92537 0.92871 0.83754 0.91884 0.96476 0.81686 0.92969 0.80170 0.91090 0.89661 0.89889 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.14 37.15 0.34 -1.88 16 2 C 0.16 2.29 3.02 -68.87 -0.21 2.08 16 3 H 0.07 1.09 7.79 -51.93 -0.40 0.68 16 4 N -0.68 -12.08 5.99 -107.96 -0.65 -12.72 16 5 C 0.04 0.76 5.13 -3.82 -0.02 0.74 16 6 C 0.23 5.88 3.10 -27.88 -0.09 5.80 16 7 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 8 O -0.56 -14.29 12.07 -35.23 -0.43 -14.71 16 9 C -0.57 -15.79 8.76 -34.44 -0.30 -16.09 16 10 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 11 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 12 N -0.86 -25.64 12.84 55.43 0.71 -24.92 16 13 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.20 -2.93 5.09 -105.05 -0.53 -3.47 16 18 C 0.07 1.08 11.66 -17.36 -0.20 0.88 16 19 N -0.31 -4.72 12.57 30.62 0.39 -4.34 16 20 N -0.38 -4.84 4.01 -68.16 -0.27 -5.11 16 21 C 0.11 0.81 11.47 59.85 0.69 1.49 16 22 C 0.05 0.56 11.40 -17.22 -0.20 0.36 16 23 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.75 7.45 -51.92 -0.39 0.36 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.34 6.11 7.86 -39.29 -0.31 5.80 16 27 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 28 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 29 H 0.34 7.61 9.04 45.56 0.41 8.02 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -32.78 301.16 -5.77 -38.55 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.42 Total: 10.43 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.62 Total: -7.94 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.18 Total: -47.10 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.43 Total: -14.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.78 -5.77 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309162181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.499 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds