Wall clock time and date at job start Sun Mar 29 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47487 * 2 1 4 4 N 1.46900 * 109.47432 * 119.99986 * 2 1 3 5 5 C 1.46898 * 111.00102 * 275.00065 * 4 2 1 6 6 C 1.53002 * 109.47499 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.46985 * 59.99370 * 6 5 4 8 8 O 1.42903 * 109.46596 * 300.00068 * 6 5 4 9 9 C 1.50699 * 109.47344 * 179.97438 * 6 5 4 10 10 H 1.07996 * 120.00152 * 0.02562 * 9 6 5 11 11 C 1.37880 * 119.99876 * 179.97438 * 9 6 5 12 12 N 1.31509 * 119.99877 * 0.02562 * 11 9 6 13 13 Si 1.86792 * 119.99856 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47088 * 60.00651 * 13 11 9 15 15 H 1.48499 * 109.47233 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47338 * 300.00355 * 13 11 9 17 17 C 1.50700 * 109.47005 * 239.99784 * 2 1 3 18 18 C 1.39870 * 126.04185 * 279.97789 * 17 2 1 19 19 N 1.30839 * 108.19862 * 180.02562 * 18 17 2 20 20 N 1.40079 * 108.20849 * 359.97438 * 19 18 17 21 21 C 1.46502 * 126.03442 * 179.97438 * 20 19 18 22 22 C 1.34948 * 107.92564 * 0.02562 * 20 19 18 23 23 H 1.09003 * 109.47575 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47245 * 299.99898 * 1 2 3 25 25 H 1.08996 * 109.47540 * 59.99590 * 1 2 3 26 26 H 1.00904 * 110.99934 * 38.94946 * 4 2 1 27 27 H 1.08995 * 109.47113 * 299.99759 * 5 4 2 28 28 H 1.09001 * 109.47517 * 59.99441 * 5 4 2 29 29 H 0.96700 * 114.00182 * 299.98839 * 8 6 5 30 30 H 0.97003 * 119.99812 * 179.97438 * 12 11 9 31 31 H 1.07997 * 125.89658 * 359.97438 * 18 17 2 32 32 H 1.09008 * 109.47064 * 269.99643 * 21 20 19 33 33 H 1.08998 * 109.47431 * 29.99992 * 21 20 19 34 34 H 1.08999 * 109.46741 * 150.00314 * 21 20 19 35 35 H 1.08007 * 126.12251 * 180.26869 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5745 7 1 3.5904 -0.9272 3.3691 8 8 1.7079 -1.6126 3.8740 9 6 2.6602 0.4058 4.7514 10 1 2.3649 1.4381 4.6356 11 6 3.0955 -0.0535 5.9764 12 7 3.4545 -1.3107 6.1176 13 14 3.1768 1.1105 7.4351 14 1 1.8214 1.6488 7.7150 15 1 3.6743 0.3770 8.6266 16 1 4.0999 2.2312 7.1233 17 6 2.0322 -0.7105 -1.2304 18 6 2.1218 -2.0957 -1.4020 19 7 2.6029 -2.3293 -2.5960 20 7 2.8345 -1.0984 -3.2232 21 6 3.3717 -0.9062 -4.5726 22 6 2.4765 -0.1209 -2.3645 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.4495 -1.4979 1.4101 27 1 2.7588 1.0461 2.1182 28 1 1.0871 0.6164 2.5525 29 1 0.8021 -1.3350 4.0677 30 1 3.7612 -1.6337 6.9793 31 1 1.8428 -2.8432 -0.6742 32 1 4.4589 -0.8434 -4.5253 33 1 3.0834 -1.7482 -5.2018 34 1 2.9725 0.0162 -4.9945 35 1 2.5303 0.9416 -2.5509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309162181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:11 Heat of formation + Delta-G solvation = -0.783670 kcal Electronic energy + Delta-G solvation = -16808.154674 eV Core-core repulsion = 14034.785001 eV Total energy + Delta-G solvation = -2773.369673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.05037 -38.63604 -36.73206 -34.22550 -33.89183 -32.21724 -30.21594 -28.95291 -27.40119 -25.93052 -23.52513 -22.50156 -21.63942 -20.72962 -18.96819 -17.79752 -16.66760 -16.56218 -16.25157 -16.11602 -15.59903 -15.27891 -15.10178 -14.45285 -14.26106 -13.89814 -13.61202 -13.40745 -13.29627 -13.04034 -12.85156 -12.77124 -12.49627 -12.36056 -12.27539 -12.00219 -11.35548 -10.99663 -10.67031 -10.26711 -10.12023 -9.27909 -9.01158 -8.09752 -6.35908 1.02877 1.42930 1.44927 1.52972 1.79034 1.93154 2.41757 3.15971 3.45812 3.81166 4.09669 4.27539 4.35246 4.38150 4.43520 4.47766 4.52004 4.61172 4.68821 4.72157 4.84514 4.91962 5.12997 5.15180 5.26086 5.36711 5.66458 5.76591 5.81317 6.08474 6.22954 6.39336 6.67635 6.80173 6.82615 7.37402 7.60694 8.94643 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.004459 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.692296 B = 6277.337590 C = 6330.678717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.162 3.838 3 H 0.080 0.920 4 N -0.687 5.687 5 C 0.059 3.941 6 C 0.232 3.768 7 H 0.017 0.983 8 O -0.577 6.577 9 C -0.587 4.587 10 H 0.061 0.939 11 C 0.024 3.976 12 N -0.901 5.901 13 Si 0.961 3.039 14 H -0.265 1.265 15 H -0.287 1.287 16 H -0.269 1.269 17 C -0.230 4.230 18 C 0.054 3.946 19 N -0.340 5.340 20 N -0.383 5.383 21 C 0.095 3.905 22 C 0.058 3.942 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.341 0.659 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.353 0.647 30 H 0.260 0.740 31 H 0.176 0.824 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 5.520 -18.627 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 H 0.098 0.902 4 N -0.319 5.319 5 C -0.070 4.070 6 C 0.174 3.826 7 H 0.035 0.965 8 O -0.381 6.381 9 C -0.626 4.626 10 H 0.079 0.921 11 C -0.178 4.178 12 N -0.538 5.538 13 Si 0.785 3.215 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.242 4.242 18 C -0.132 4.132 19 N -0.163 5.163 20 N -0.166 5.166 21 C -0.045 4.045 22 C -0.089 4.089 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.160 0.840 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.198 0.802 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.933 4.234 -19.799 20.458 hybrid contribution -1.284 1.206 1.920 2.606 sum -4.216 5.440 -17.878 19.157 Atomic orbital electron populations 1.22368 0.95925 1.02009 1.02101 1.19712 0.92598 0.96182 0.86399 0.90161 1.60417 1.57960 1.09890 1.03594 1.22407 0.98669 0.95087 0.90861 1.19222 0.88749 0.84655 0.89936 0.96479 1.86526 1.22352 1.36895 1.92314 1.22039 1.46911 0.97270 0.96332 0.92052 1.25927 0.93588 0.96333 1.01968 1.70229 1.42587 1.16099 1.24887 0.85600 0.78935 0.78809 0.78131 1.19021 1.21214 1.19347 1.20108 1.13328 0.93224 0.97514 1.23764 0.98347 0.97018 0.94028 1.77247 1.23996 1.05243 1.09807 1.48768 1.49849 1.03254 1.14708 1.22157 0.99989 1.05086 0.77250 1.22741 0.99273 0.96639 0.90222 0.92855 0.92998 0.90962 0.83988 0.92032 0.95376 0.80220 0.93084 0.80678 0.90126 0.89297 0.86436 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 9.14 71.98 0.66 -3.27 16 2 C 0.16 4.50 3.02 44.17 0.13 4.63 16 3 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 4 N -0.69 -24.42 5.99 -495.47 -2.97 -27.38 16 5 C 0.06 2.39 5.13 86.30 0.44 2.83 16 6 C 0.23 12.01 3.10 29.85 0.09 12.11 16 7 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 8 O -0.58 -29.78 12.07 -148.98 -1.80 -31.58 16 9 C -0.59 -32.38 8.76 25.60 0.22 -32.15 16 10 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 11 C 0.02 1.36 5.40 84.66 0.46 1.82 16 12 N -0.90 -54.81 12.84 21.45 0.28 -54.54 16 13 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 C -0.23 -6.29 5.09 -20.14 -0.10 -6.39 16 18 C 0.05 1.63 11.66 85.24 0.99 2.62 16 19 N -0.34 -10.34 12.57 -57.02 -0.72 -11.05 16 20 N -0.38 -8.84 4.01 -369.55 -1.48 -10.32 16 21 C 0.09 1.18 11.47 127.77 1.47 2.65 16 22 C 0.06 1.28 11.40 83.54 0.95 2.23 16 23 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 24 H 0.05 1.27 7.45 -2.38 -0.02 1.26 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.34 12.30 7.86 -89.69 -0.71 11.60 16 27 H 0.06 2.49 8.05 -2.39 -0.02 2.47 16 28 H 0.03 1.07 7.44 -2.39 -0.02 1.05 16 29 H 0.35 15.91 9.04 -74.06 -0.67 15.24 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.18 5.19 8.06 -2.91 -0.02 5.17 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.21 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -71.23 301.16 0.37 -70.86 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.28 Total: 31.45 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.32 Total: -12.92 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.89 Total: -103.29 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.80 Total: -31.58 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.23 0.37 -70.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309162181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.072 kcal (2) G-P(sol) polarization free energy of solvation -71.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds