Wall clock time and date at job start Sun Mar 29 2020 22:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 8 8 O 1.42895 * 109.47000 * 299.99940 * 6 5 4 9 9 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 6 5 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 6 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.47574 * 89.99780 * 13 11 9 15 15 H 1.48500 * 109.47346 * 209.99892 * 13 11 9 16 16 H 1.48499 * 109.47067 * 329.99541 * 13 11 9 17 17 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 18 18 C 1.39865 * 126.04106 * 79.69585 * 17 2 1 19 19 N 1.30846 * 108.20387 * 179.81757 * 18 17 2 20 20 N 1.40086 * 108.20062 * 0.43144 * 19 18 17 21 21 C 1.46504 * 126.03539 * 179.73706 * 20 19 18 22 22 C 1.34950 * 107.92862 * 359.72824 * 20 19 18 23 23 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 24 24 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 26 26 H 1.00891 * 110.99988 * 208.95015 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 0.96698 * 114.00355 * 299.99879 * 8 6 5 30 30 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 31 31 H 1.07994 * 125.89873 * 359.97438 * 18 17 2 32 32 H 1.08994 * 109.47403 * 269.98137 * 21 20 19 33 33 H 1.09002 * 109.46764 * 29.98496 * 21 20 19 34 34 H 1.08999 * 109.46817 * 149.98115 * 21 20 19 35 35 H 1.07993 * 126.12565 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 1 1.9201 -1.3564 -3.8032 8 8 3.9012 -1.0482 -3.3044 9 6 2.6611 0.4065 -4.7512 10 1 2.3651 1.4387 -4.6354 11 6 3.0973 -0.0523 -5.9760 12 7 3.4573 -1.3094 -6.1171 13 14 3.1785 1.1117 -7.4346 14 1 4.5151 1.7574 -7.4790 15 1 2.9551 0.3495 -8.6893 16 1 2.1298 2.1538 -7.2952 17 6 2.0324 -0.7105 1.2303 18 6 2.1160 -2.0958 1.4041 19 7 2.6025 -2.3296 2.5961 20 7 2.8348 -1.0986 3.2230 21 6 3.3718 -0.9065 4.5725 22 6 2.4769 -0.1210 2.3643 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.9173 -1.1203 -1.0290 27 1 2.7588 1.0465 -2.1182 28 1 1.0870 0.6166 -2.5526 29 1 4.5563 -0.3692 -3.0924 30 1 3.7646 -1.6321 -6.9786 31 1 1.8309 -2.8433 0.6787 32 1 2.5510 -0.8728 5.2888 33 1 4.0365 -1.7341 4.8202 34 1 3.9275 0.0304 4.6124 35 1 2.5353 0.9414 2.5490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309162372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:13 Heat of formation + Delta-G solvation = 24.774529 kcal Electronic energy + Delta-G solvation = -16822.578535 eV Core-core repulsion = 14050.317149 eV Total energy + Delta-G solvation = -2772.261386 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15023 -36.95419 -35.06381 -32.97955 -32.06849 -30.89126 -29.02088 -27.43543 -26.57634 -24.22162 -22.08829 -21.09957 -20.21352 -19.60816 -16.91836 -16.83332 -15.47228 -15.22693 -14.65159 -14.52878 -14.28778 -13.99318 -13.69385 -13.18477 -12.90436 -12.66947 -12.57552 -12.36703 -11.78071 -11.52701 -11.35473 -10.97906 -10.91206 -10.78499 -10.71021 -10.22531 -10.02239 -9.35872 -8.95558 -8.53491 -8.35012 -8.08162 -7.69436 -5.95906 -4.14108 1.91032 2.53385 2.91890 3.30179 3.37302 3.39960 4.39106 4.45497 4.76236 4.93015 4.94713 5.13635 5.19734 5.31145 5.44841 5.57313 5.77159 5.84289 5.97262 6.18182 6.23883 6.27007 6.37902 6.52096 6.61977 6.77284 6.96568 7.00378 7.65329 7.77926 7.81980 7.95752 8.10573 8.30609 8.89816 9.43900 9.63290 11.08359 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048232 B = 0.004539 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.388921 B = 6166.606896 C = 6358.234559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.159 3.841 3 H 0.039 0.961 4 N -0.679 5.679 5 C 0.037 3.963 6 C 0.231 3.769 7 H 0.064 0.936 8 O -0.565 6.565 9 C -0.572 4.572 10 H 0.054 0.946 11 C 0.079 3.921 12 N -0.858 5.858 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.229 4.229 18 C 0.073 3.927 19 N -0.305 5.305 20 N -0.384 5.384 21 C 0.105 3.895 22 C 0.051 3.949 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.345 0.655 27 H 0.015 0.985 28 H 0.064 0.936 29 H 0.340 0.660 30 H 0.260 0.740 31 H 0.188 0.812 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 3.778 18.155 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.048 3.952 3 H 0.057 0.943 4 N -0.311 5.311 5 C -0.092 4.092 6 C 0.174 3.826 7 H 0.082 0.918 8 O -0.367 6.367 9 C -0.611 4.611 10 H 0.072 0.928 11 C -0.127 4.127 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.241 4.241 18 C -0.114 4.114 19 N -0.126 5.126 20 N -0.166 5.166 21 C -0.037 4.037 22 C -0.096 4.096 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.164 0.836 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.183 0.817 30 H 0.070 0.930 31 H 0.205 0.795 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.252 1.930 18.744 18.977 hybrid contribution 0.828 2.493 -1.077 2.839 sum -1.423 4.423 17.667 18.267 Atomic orbital electron populations 1.21747 0.94629 1.02148 1.00400 1.19730 0.95069 0.94154 0.86244 0.94327 1.60564 1.34087 1.33239 1.03260 1.22880 1.00112 0.93845 0.92395 1.19425 0.81744 0.93593 0.87864 0.91833 1.86591 1.21009 1.36921 1.92133 1.21648 1.47389 0.96780 0.95279 0.92758 1.25033 0.94280 0.94825 0.98541 1.70087 1.41244 1.14062 1.23996 0.86684 0.78384 0.81063 0.82281 1.20639 1.21125 1.19856 1.20265 1.12335 0.93818 0.97638 1.23848 0.97326 0.96301 0.93906 1.77370 1.22787 1.03107 1.09325 1.48423 1.50689 1.04109 1.13392 1.21774 0.99370 1.03411 0.79128 1.22264 1.01055 0.95201 0.91047 0.92590 0.92133 0.93575 0.83559 0.96698 0.91706 0.81701 0.93036 0.79531 0.91096 0.89479 0.89779 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.40 37.16 0.35 -1.47 16 2 C 0.16 2.37 3.05 -68.86 -0.21 2.16 16 3 H 0.04 0.57 7.79 -51.93 -0.40 0.17 16 4 N -0.68 -12.23 6.11 -107.94 -0.66 -12.89 16 5 C 0.04 0.76 5.13 -3.82 -0.02 0.74 16 6 C 0.23 5.90 3.10 -27.88 -0.09 5.81 16 7 H 0.06 1.82 8.14 -51.93 -0.42 1.40 16 8 O -0.56 -14.50 12.07 -35.23 -0.43 -14.93 16 9 C -0.57 -15.81 8.76 -34.44 -0.30 -16.11 16 10 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 11 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 12 N -0.86 -25.67 12.84 55.43 0.71 -24.95 16 13 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.23 -3.20 4.80 -105.06 -0.50 -3.70 16 18 C 0.07 1.07 11.47 -17.36 -0.20 0.87 16 19 N -0.30 -4.54 12.58 30.62 0.39 -4.15 16 20 N -0.38 -4.63 4.01 -68.16 -0.27 -4.90 16 21 C 0.10 0.75 11.47 59.85 0.69 1.44 16 22 C 0.05 0.60 11.40 -17.22 -0.20 0.40 16 23 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.35 6.47 7.55 -39.30 -0.30 6.17 16 27 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 28 H 0.06 1.33 7.44 -51.93 -0.39 0.95 16 29 H 0.34 7.79 9.04 45.56 0.41 8.20 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -32.46 300.78 -5.73 -38.19 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.40 Total: 10.57 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.58 Total: -7.72 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.16 Total: -46.90 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.43 Total: -14.93 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.46 -5.73 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309162372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.963 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds