Wall clock time and date at job start Sun Mar 29 2020 22:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 8 8 O 1.42895 * 109.47000 * 299.99940 * 6 5 4 9 9 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 6 5 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 6 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.47574 * 89.99780 * 13 11 9 15 15 H 1.48500 * 109.47346 * 209.99892 * 13 11 9 16 16 H 1.48499 * 109.47067 * 329.99541 * 13 11 9 17 17 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 18 18 C 1.39865 * 126.04106 * 79.69585 * 17 2 1 19 19 N 1.30846 * 108.20387 * 179.81757 * 18 17 2 20 20 N 1.40086 * 108.20062 * 0.43144 * 19 18 17 21 21 C 1.46504 * 126.03539 * 179.73706 * 20 19 18 22 22 C 1.34950 * 107.92862 * 359.72824 * 20 19 18 23 23 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 24 24 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 26 26 H 1.00891 * 110.99988 * 208.95015 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 0.96698 * 114.00355 * 299.99879 * 8 6 5 30 30 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 31 31 H 1.07994 * 125.89873 * 359.97438 * 18 17 2 32 32 H 1.08994 * 109.47403 * 269.98137 * 21 20 19 33 33 H 1.09002 * 109.46764 * 29.98496 * 21 20 19 34 34 H 1.08999 * 109.46817 * 149.98115 * 21 20 19 35 35 H 1.07993 * 126.12565 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 1 1.9201 -1.3564 -3.8032 8 8 3.9012 -1.0482 -3.3044 9 6 2.6611 0.4065 -4.7512 10 1 2.3651 1.4387 -4.6354 11 6 3.0973 -0.0523 -5.9760 12 7 3.4573 -1.3094 -6.1171 13 14 3.1785 1.1117 -7.4346 14 1 4.5151 1.7574 -7.4790 15 1 2.9551 0.3495 -8.6893 16 1 2.1298 2.1538 -7.2952 17 6 2.0324 -0.7105 1.2303 18 6 2.1160 -2.0958 1.4041 19 7 2.6025 -2.3296 2.5961 20 7 2.8348 -1.0986 3.2230 21 6 3.3718 -0.9065 4.5725 22 6 2.4769 -0.1210 2.3643 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.9173 -1.1203 -1.0290 27 1 2.7588 1.0465 -2.1182 28 1 1.0870 0.6166 -2.5526 29 1 4.5563 -0.3692 -3.0924 30 1 3.7646 -1.6321 -6.9786 31 1 1.8309 -2.8433 0.6787 32 1 2.5510 -0.8728 5.2888 33 1 4.0365 -1.7341 4.8202 34 1 3.9275 0.0304 4.6124 35 1 2.5353 0.9414 2.5490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309162372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:13 Heat of formation + Delta-G solvation = -0.685652 kcal Electronic energy + Delta-G solvation = -16823.682571 eV Core-core repulsion = 14050.317149 eV Total energy + Delta-G solvation = -2773.365423 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.13411 -38.58532 -36.69858 -34.23140 -33.91394 -32.26135 -30.17488 -29.16430 -27.46249 -26.00994 -23.34552 -22.44374 -21.64854 -20.69454 -18.94392 -17.93614 -16.68225 -16.54278 -16.34680 -16.24475 -15.63283 -15.26585 -15.10610 -14.67461 -14.23574 -13.67440 -13.60153 -13.33606 -13.27967 -13.06437 -12.85195 -12.75273 -12.61713 -12.38642 -12.15551 -11.97760 -11.34663 -10.98441 -10.68608 -10.32407 -10.12850 -9.30024 -9.14679 -8.10227 -6.36296 0.96541 1.42515 1.43453 1.54422 1.73812 1.84479 2.41435 3.15501 3.39758 3.72374 4.04671 4.24602 4.35710 4.42296 4.42897 4.47255 4.55230 4.62739 4.71210 4.74718 4.88831 4.90922 5.09948 5.15605 5.24600 5.47393 5.66258 5.70071 5.80313 6.07925 6.17082 6.37759 6.64808 6.77116 6.79510 7.36701 7.58783 8.94442 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048232 B = 0.004539 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.388921 B = 6166.606896 C = 6358.234559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.164 3.836 3 H 0.048 0.952 4 N -0.685 5.685 5 C 0.058 3.942 6 C 0.232 3.768 7 H 0.021 0.979 8 O -0.578 6.578 9 C -0.586 4.586 10 H 0.061 0.939 11 C 0.024 3.976 12 N -0.901 5.901 13 Si 0.961 3.039 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.251 4.251 18 C 0.056 3.944 19 N -0.336 5.336 20 N -0.380 5.380 21 C 0.094 3.906 22 C 0.067 3.933 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.340 0.660 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.352 0.648 30 H 0.260 0.740 31 H 0.178 0.822 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 6.069 19.506 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.054 3.946 3 H 0.066 0.934 4 N -0.317 5.317 5 C -0.072 4.072 6 C 0.174 3.826 7 H 0.039 0.961 8 O -0.382 6.382 9 C -0.625 4.625 10 H 0.079 0.921 11 C -0.178 4.178 12 N -0.538 5.538 13 Si 0.786 3.214 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.263 4.263 18 C -0.129 4.129 19 N -0.159 5.159 20 N -0.162 5.162 21 C -0.046 4.046 22 C -0.081 4.081 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.159 0.841 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.197 0.803 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.079 4.228 20.128 20.672 hybrid contribution 0.792 1.762 -1.362 2.364 sum -1.287 5.990 18.766 19.741 Atomic orbital electron populations 1.21718 0.94020 1.01646 1.01107 1.19717 0.95425 0.94274 0.85217 0.93361 1.60504 1.33824 1.33275 1.04122 1.22453 0.99788 0.93494 0.91435 1.19245 0.81200 0.92214 0.89940 0.96080 1.86528 1.21543 1.37804 1.92280 1.22058 1.46848 0.97303 0.96246 0.92113 1.25928 0.93833 0.96378 1.01680 1.70236 1.42602 1.16188 1.24777 0.85538 0.78795 0.78851 0.78243 1.19800 1.21049 1.18772 1.20195 1.14416 0.93434 0.98291 1.23820 0.98050 0.96901 0.94125 1.77300 1.23823 1.05124 1.09626 1.48823 1.49524 1.03247 1.14647 1.22191 1.00304 1.05043 0.77062 1.22786 0.98673 0.96718 0.89880 0.93449 0.93270 0.91199 0.84145 0.95887 0.91686 0.80344 0.93071 0.80501 0.89391 0.89442 0.86664 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.40 71.98 0.68 -2.70 16 2 C 0.16 4.67 3.05 44.17 0.13 4.81 16 3 H 0.05 1.30 7.79 -2.38 -0.02 1.28 16 4 N -0.68 -24.70 6.11 -495.42 -3.03 -27.73 16 5 C 0.06 2.37 5.13 86.31 0.44 2.81 16 6 C 0.23 12.05 3.10 29.85 0.09 12.14 16 7 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 8 O -0.58 -30.26 12.07 -148.98 -1.80 -32.06 16 9 C -0.59 -32.45 8.76 25.60 0.22 -32.23 16 10 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 11 C 0.02 1.36 5.40 84.65 0.46 1.82 16 12 N -0.90 -54.83 12.84 21.45 0.28 -54.56 16 13 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 17 C -0.25 -6.69 4.80 -20.15 -0.10 -6.78 16 18 C 0.06 1.67 11.47 85.23 0.98 2.65 16 19 N -0.34 -9.84 12.58 -57.03 -0.72 -10.55 16 20 N -0.38 -8.27 4.01 -369.56 -1.48 -9.75 16 21 C 0.09 1.05 11.47 127.77 1.47 2.52 16 22 C 0.07 1.39 11.40 83.54 0.95 2.34 16 23 H 0.05 1.32 7.45 -2.39 -0.02 1.30 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.34 12.88 7.55 -89.70 -0.68 12.21 16 27 H 0.02 0.90 8.06 -2.39 -0.02 0.88 16 28 H 0.06 2.65 7.44 -2.39 -0.02 2.63 16 29 H 0.35 16.23 9.04 -74.06 -0.67 15.56 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.18 5.33 8.06 -2.91 -0.02 5.31 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -70.54 300.78 0.35 -70.19 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.26 Total: 31.49 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 5.33 Total: -12.62 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.95 Total: -102.59 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.80 Total: -32.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.54 0.35 -70.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309162372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.505 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds