Wall clock time and date at job start Sun Mar 29 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46891 * 2 1 4 4 C 1.52998 * 109.47363 * 240.00248 * 2 1 3 5 5 C 1.50700 * 109.47178 * 184.99879 * 4 2 1 6 6 N 1.29954 * 126.28828 * 90.01928 * 5 4 2 7 7 O 1.21303 * 110.24818 * 179.97438 * 6 5 4 8 8 C 1.33640 * 109.81218 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.54664 * 180.02562 * 8 7 6 10 10 N 1.46509 * 109.46873 * 269.96991 * 9 8 7 11 11 C 1.46498 * 120.00080 * 270.00339 * 10 9 8 12 12 C 1.36940 * 119.99750 * 89.99868 * 10 9 8 13 13 H 1.08000 * 120.00068 * 20.37367 * 12 10 9 14 14 C 1.38808 * 119.99993 * 200.37151 * 12 10 9 15 15 N 1.31618 * 119.99772 * 14.98105 * 14 12 10 16 16 Si 1.86796 * 120.00190 * 194.98789 * 14 12 10 17 17 H 1.48498 * 109.47341 * 84.99841 * 16 14 12 18 18 H 1.48499 * 109.47373 * 205.00465 * 16 14 12 19 19 H 1.48509 * 109.47009 * 324.99998 * 16 14 12 20 20 N 1.31123 * 106.89955 * 359.76862 * 8 7 6 21 21 H 1.09001 * 109.46682 * 60.00209 * 1 2 3 22 22 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47401 * 299.99864 * 1 2 3 24 24 H 1.08995 * 109.47289 * 119.99521 * 2 1 3 25 25 H 1.09005 * 109.47124 * 59.99896 * 3 2 1 26 26 H 1.08998 * 109.47313 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46947 * 299.99817 * 3 2 1 28 28 H 1.09001 * 109.47055 * 304.99285 * 4 2 1 29 29 H 1.08993 * 109.47275 * 64.99765 * 4 2 1 30 30 H 1.09001 * 109.47384 * 29.96481 * 9 8 7 31 31 H 1.09000 * 109.46999 * 149.97318 * 9 8 7 32 32 H 1.08998 * 109.47237 * 95.09302 * 11 10 9 33 33 H 1.08992 * 109.46854 * 215.09302 * 11 10 9 34 34 H 1.09001 * 109.46888 * 335.09349 * 11 10 9 35 35 H 0.97003 * 120.00087 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.8293 -1.1889 6 7 4.2224 -1.8035 -0.6630 7 8 5.4118 -1.5933 -0.7751 8 6 5.6090 -0.4295 -1.4017 9 6 6.9389 0.1950 -1.7374 10 7 7.3689 1.0527 -0.6302 11 6 6.9871 2.4669 -0.6081 12 6 8.1278 0.5324 0.3841 13 1 8.6814 -0.3820 0.2299 14 6 8.1857 1.1804 1.6102 15 7 7.3031 2.1114 1.9048 16 14 9.5160 0.7313 2.8422 17 1 10.7508 1.4986 2.5390 18 1 9.0524 1.0613 4.2138 19 1 9.8026 -0.7231 2.7531 20 7 4.4244 0.0626 -1.6735 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6056 -1.7198 -1.2951 29 1 1.7517 -0.1583 -2.1369 30 1 7.6785 -0.5895 -1.8977 31 1 6.8411 0.7930 -2.6434 32 1 6.0852 2.5904 -0.0085 33 1 7.7955 3.0547 -0.1737 34 1 6.7963 2.8076 -1.6258 35 1 7.3433 2.5640 2.7618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330363791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:26 Heat of formation + Delta-G solvation = 73.126864 kcal Electronic energy + Delta-G solvation = -17498.659160 eV Core-core repulsion = 14728.494488 eV Total energy + Delta-G solvation = -2770.164672 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.65433 -36.81613 -35.98946 -34.34994 -32.32593 -30.84589 -27.79043 -27.07332 -26.82185 -25.94527 -22.89640 -22.05420 -20.81594 -19.58423 -17.27507 -16.85307 -16.68517 -15.15386 -14.90554 -14.44485 -13.98664 -13.87780 -13.68487 -13.28761 -12.59698 -12.22259 -12.09677 -11.87121 -11.58952 -11.29303 -11.22764 -11.02706 -10.84962 -10.78354 -10.61718 -10.55251 -10.38073 -10.20863 -10.12683 -10.04886 -9.10524 -8.73878 -7.12330 -5.93054 -3.39578 2.00571 2.99304 3.31719 3.38028 3.39452 3.80414 4.29939 4.36869 4.70450 4.98868 5.05866 5.24747 5.29167 5.40529 5.59703 5.64613 5.76200 5.83919 5.98033 6.02121 6.05444 6.15528 6.21175 6.28854 6.45463 6.58252 6.64363 6.67680 6.85344 7.23179 7.59989 7.67941 8.14448 8.97896 9.03764 9.59385 10.05474 11.10410 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.006925 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.745213 B = 4042.472871 C = 4320.241387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.018 4.018 5 C 0.161 3.839 6 N -0.408 5.408 7 O 0.066 5.934 8 C 0.186 3.814 9 C 0.223 3.777 10 N -0.570 5.570 11 C 0.158 3.842 12 C -0.273 4.273 13 H 0.080 0.920 14 C 0.010 3.990 15 N -0.895 5.895 16 Si 0.913 3.087 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.276 1.276 20 N -0.502 5.502 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.008 0.992 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -2.487 -6.213 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.057 4.057 5 C -0.112 4.112 6 N -0.121 5.121 7 O 0.012 5.988 8 C -0.038 4.038 9 C 0.091 3.909 10 N -0.290 5.290 11 C 0.014 3.986 12 C -0.402 4.402 13 H 0.098 0.902 14 C -0.190 4.190 15 N -0.537 5.537 16 Si 0.742 3.258 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.201 1.201 20 N -0.237 5.237 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.530 -2.735 -5.831 10.689 hybrid contribution 0.588 -0.142 1.020 1.187 sum -7.942 -2.877 -4.811 9.721 Atomic orbital electron populations 1.21809 0.94698 1.01558 1.01954 1.21079 0.95533 0.97218 0.97262 1.21826 1.02623 0.94701 1.01111 1.19932 0.84109 1.01797 0.99829 1.25609 0.99535 0.88452 0.97575 1.74463 0.90159 1.24606 1.22829 1.85251 1.19460 1.36334 1.57722 1.31855 1.00104 0.82514 0.89302 1.20070 0.84052 0.93761 0.93060 1.44451 1.55997 1.04852 1.23746 1.20950 1.00174 0.82503 0.94972 1.19378 1.19820 1.10117 0.90916 0.90235 1.25135 0.98135 0.98790 0.96965 1.70111 1.33743 1.27198 1.22692 0.86152 0.81149 0.78444 0.80103 1.20970 1.21612 1.20120 1.71825 0.98614 1.28368 1.24918 0.92514 0.92765 0.92433 0.91161 0.93061 0.91549 0.92693 0.89996 0.89316 0.89873 0.89306 0.94840 0.92989 0.97328 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.09 -1.31 2.91 -90.62 -0.26 -1.57 16 3 C -0.15 -2.30 9.01 37.16 0.33 -1.97 16 4 C -0.02 -0.26 5.32 -27.88 -0.15 -0.41 16 5 C 0.16 3.14 6.66 -156.36 -1.04 2.10 16 6 N -0.41 -8.66 12.16 30.90 0.38 -8.28 16 7 O 0.07 1.45 11.31 18.11 0.20 1.66 16 8 C 0.19 3.92 8.10 -13.06 -0.11 3.81 16 9 C 0.22 4.38 6.33 -5.19 -0.03 4.34 16 10 N -0.57 -13.71 2.91 -182.50 -0.53 -14.24 16 11 C 0.16 3.77 9.02 59.85 0.54 4.31 16 12 C -0.27 -7.16 9.68 -15.06 -0.15 -7.31 16 13 H 0.08 2.01 7.86 -52.49 -0.41 1.59 16 14 C 0.01 0.28 5.06 -17.43 -0.09 0.19 16 15 N -0.90 -25.43 10.67 55.49 0.59 -24.84 16 16 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 N -0.50 -10.40 10.89 -9.86 -0.11 -10.51 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.32 6.85 -51.93 -0.36 0.97 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 31 H 0.09 1.51 7.86 -51.93 -0.41 1.11 16 32 H 0.03 0.89 7.40 -51.93 -0.38 0.50 16 33 H 0.05 1.31 7.21 -51.93 -0.37 0.93 16 34 H 0.01 0.17 7.84 -51.93 -0.41 -0.24 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 296.60 15.07 4.47 4.47 Total: -1.00 -29.91 296.60 -5.91 -35.82 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.28 Total: -2.57 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.61 Total: 2.28 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.33 Total: -57.87 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.20 Total: 1.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.91 -5.91 -35.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.945 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds