Wall clock time and date at job start Sun Mar 29 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46891 * 2 1 4 4 C 1.52998 * 109.47363 * 240.00248 * 2 1 3 5 5 C 1.50700 * 109.47178 * 184.99879 * 4 2 1 6 6 N 1.29954 * 126.28828 * 90.01928 * 5 4 2 7 7 O 1.21303 * 110.24818 * 179.97438 * 6 5 4 8 8 C 1.33640 * 109.81218 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.54664 * 180.02562 * 8 7 6 10 10 N 1.46509 * 109.46873 * 269.96991 * 9 8 7 11 11 C 1.46498 * 120.00080 * 270.00339 * 10 9 8 12 12 C 1.36940 * 119.99750 * 89.99868 * 10 9 8 13 13 H 1.08000 * 120.00068 * 20.37367 * 12 10 9 14 14 C 1.38808 * 119.99993 * 200.37151 * 12 10 9 15 15 N 1.31618 * 119.99772 * 14.98105 * 14 12 10 16 16 Si 1.86796 * 120.00190 * 194.98789 * 14 12 10 17 17 H 1.48498 * 109.47341 * 84.99841 * 16 14 12 18 18 H 1.48499 * 109.47373 * 205.00465 * 16 14 12 19 19 H 1.48509 * 109.47009 * 324.99998 * 16 14 12 20 20 N 1.31123 * 106.89955 * 359.76862 * 8 7 6 21 21 H 1.09001 * 109.46682 * 60.00209 * 1 2 3 22 22 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47401 * 299.99864 * 1 2 3 24 24 H 1.08995 * 109.47289 * 119.99521 * 2 1 3 25 25 H 1.09005 * 109.47124 * 59.99896 * 3 2 1 26 26 H 1.08998 * 109.47313 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46947 * 299.99817 * 3 2 1 28 28 H 1.09001 * 109.47055 * 304.99285 * 4 2 1 29 29 H 1.08993 * 109.47275 * 64.99765 * 4 2 1 30 30 H 1.09001 * 109.47384 * 29.96481 * 9 8 7 31 31 H 1.09000 * 109.46999 * 149.97318 * 9 8 7 32 32 H 1.08998 * 109.47237 * 95.09302 * 11 10 9 33 33 H 1.08992 * 109.46854 * 215.09302 * 11 10 9 34 34 H 1.09001 * 109.46888 * 335.09349 * 11 10 9 35 35 H 0.97003 * 120.00087 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.8293 -1.1889 6 7 4.2224 -1.8035 -0.6630 7 8 5.4118 -1.5933 -0.7751 8 6 5.6090 -0.4295 -1.4017 9 6 6.9389 0.1950 -1.7374 10 7 7.3689 1.0527 -0.6302 11 6 6.9871 2.4669 -0.6081 12 6 8.1278 0.5324 0.3841 13 1 8.6814 -0.3820 0.2299 14 6 8.1857 1.1804 1.6102 15 7 7.3031 2.1114 1.9048 16 14 9.5160 0.7313 2.8422 17 1 10.7508 1.4986 2.5390 18 1 9.0524 1.0613 4.2138 19 1 9.8026 -0.7231 2.7531 20 7 4.4244 0.0626 -1.6735 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5137 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6056 -1.7198 -1.2951 29 1 1.7517 -0.1583 -2.1369 30 1 7.6785 -0.5895 -1.8977 31 1 6.8411 0.7930 -2.6434 32 1 6.0852 2.5904 -0.0085 33 1 7.7955 3.0547 -0.1737 34 1 6.7963 2.8076 -1.6258 35 1 7.3433 2.5640 2.7618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330363791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:25 Heat of formation + Delta-G solvation = 53.800606 kcal Electronic energy + Delta-G solvation = -17499.497209 eV Core-core repulsion = 14728.494488 eV Total energy + Delta-G solvation = -2771.002721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.28723 -38.10014 -37.81370 -35.87933 -34.08291 -32.65963 -29.14360 -28.59671 -28.05812 -27.91678 -24.57433 -23.78117 -22.33857 -20.89582 -19.02173 -18.70375 -18.29464 -16.98996 -16.18396 -16.02647 -15.54896 -15.41864 -15.14444 -14.94780 -14.14233 -13.73422 -13.31309 -13.23031 -13.04091 -12.91391 -12.82329 -12.62132 -12.57075 -12.35295 -12.09570 -12.04209 -11.99056 -11.85625 -11.74535 -11.64444 -10.74612 -10.72965 -9.09693 -7.94699 -5.44578 0.35665 1.40073 1.47454 1.49506 1.56505 2.17920 2.46306 2.87627 3.22957 3.29593 3.60418 3.83940 3.90296 4.06381 4.32216 4.51889 4.53988 4.66655 4.70624 4.78003 4.80834 4.81662 4.91712 4.98036 5.10500 5.18365 5.22272 5.26156 5.35714 5.40784 5.58582 5.66533 6.17646 6.99740 7.37806 7.66690 8.08549 9.07790 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.006925 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.745213 B = 4042.472871 C = 4320.241387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.019 4.019 5 C 0.165 3.835 6 N -0.426 5.426 7 O 0.046 5.954 8 C 0.181 3.819 9 C 0.223 3.777 10 N -0.587 5.587 11 C 0.175 3.825 12 C -0.277 4.277 13 H 0.088 0.912 14 C -0.047 4.047 15 N -0.932 5.932 16 Si 0.973 3.027 17 H -0.276 1.276 18 H -0.300 1.300 19 H -0.267 1.267 20 N -0.509 5.509 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.018 0.982 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.120 0.880 32 H -0.004 1.004 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 -3.211 -7.458 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.198 4.198 4 C -0.057 4.057 5 C -0.108 4.108 6 N -0.142 5.142 7 O -0.004 6.004 8 C -0.043 4.043 9 C 0.092 3.908 10 N -0.308 5.308 11 C 0.030 3.970 12 C -0.406 4.406 13 H 0.106 0.894 14 C -0.243 4.243 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.202 1.202 18 H -0.227 1.227 19 H -0.191 1.191 20 N -0.244 5.244 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.015 0.985 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.447 -3.488 -7.108 12.326 hybrid contribution 0.796 0.047 1.295 1.521 sum -8.650 -3.441 -5.813 10.975 Atomic orbital electron populations 1.21748 0.91319 1.02972 1.03105 1.21057 0.98196 0.95547 0.95955 1.21782 0.99393 0.96359 1.02282 1.20237 0.81055 1.03587 1.00842 1.26459 1.01382 0.87240 0.95693 1.74458 0.90015 1.25790 1.23951 1.85214 1.20078 1.36928 1.58189 1.31920 1.00718 0.82602 0.89043 1.20338 0.83779 0.94373 0.92328 1.44535 1.56727 1.05457 1.24081 1.20662 0.97559 0.82830 0.95948 1.19742 1.19852 1.09822 0.91228 0.89417 1.25901 1.00150 0.99291 0.98940 1.70286 1.35643 1.28906 1.22810 0.85200 0.78862 0.78554 0.77335 1.20227 1.22719 1.19132 1.71852 0.98841 1.28442 1.25292 0.90799 0.91252 0.91893 0.93630 0.92500 0.96293 0.90978 0.87783 0.87251 0.87475 0.86260 0.98520 0.95180 0.93921 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.09 -2.38 2.91 -10.79 -0.03 -2.41 16 3 C -0.14 -4.36 9.01 71.98 0.65 -3.72 16 4 C -0.02 -0.51 5.32 29.85 0.16 -0.35 16 5 C 0.17 6.27 6.66 138.46 0.92 7.19 16 6 N -0.43 -17.92 12.16 -60.29 -0.73 -18.65 16 7 O 0.05 2.00 11.31 74.86 0.85 2.85 16 8 C 0.18 7.48 8.10 88.38 0.72 8.20 16 9 C 0.22 8.37 6.33 85.63 0.54 8.92 16 10 N -0.59 -28.00 2.91 -731.30 -2.13 -30.13 16 11 C 0.17 8.40 9.02 127.77 1.15 9.55 16 12 C -0.28 -14.48 9.68 84.03 0.81 -13.67 16 13 H 0.09 4.35 7.86 -2.91 -0.02 4.32 16 14 C -0.05 -2.54 5.06 84.86 0.43 -2.11 16 15 N -0.93 -54.62 10.67 21.65 0.23 -54.38 16 16 Si 0.97 44.13 29.58 68.60 2.03 46.16 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 N -0.51 -20.65 10.89 -303.18 -3.30 -23.96 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.02 0.74 6.85 -2.39 -0.02 0.72 16 27 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.11 3.50 8.03 -2.39 -0.02 3.48 16 31 H 0.12 3.74 7.86 -2.39 -0.02 3.72 16 32 H 0.00 -0.20 7.40 -2.39 -0.02 -0.22 16 33 H 0.03 1.53 7.21 -2.39 -0.02 1.52 16 34 H 0.04 1.71 7.84 -2.39 -0.02 1.69 16 35 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -65.82 296.60 4.02 -61.80 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.06 Total: 6.53 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.01 Total: 9.78 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -5.93 Total: -127.12 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.85 Total: 2.85 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.82 4.02 -61.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330363791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.604 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds