Wall clock time and date at job start Sun Mar 29 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47041 * 2 1 4 4 C 1.46903 * 110.99675 * 296.81668 * 3 2 1 5 5 C 1.50700 * 109.47369 * 295.38512 * 4 3 2 6 6 H 1.08009 * 119.99707 * 355.60743 * 5 4 3 7 7 C 1.37871 * 120.00243 * 175.60677 * 5 4 3 8 8 N 1.31517 * 120.00035 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00064 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47403 * 89.99759 * 9 7 5 11 11 H 1.48500 * 109.47132 * 209.99959 * 9 7 5 12 12 H 1.48497 * 109.46936 * 329.99783 * 9 7 5 13 13 C 1.46902 * 110.99799 * 60.76669 * 3 2 1 14 14 H 1.09000 * 109.46971 * 296.04892 * 13 3 2 15 15 C 1.52997 * 109.46692 * 176.04763 * 13 3 2 16 16 C 1.50696 * 109.46918 * 56.04946 * 13 3 2 17 17 N 1.31070 * 126.65940 * 45.02337 * 16 13 3 18 18 N 1.28845 * 107.99061 * 179.97438 * 17 16 13 19 19 N 1.28745 * 109.39578 * 359.97438 * 18 17 16 20 20 N 1.29019 * 108.80887 * 359.74564 * 19 18 17 21 21 C 1.46500 * 126.44188 * 180.24493 * 20 19 18 22 22 H 1.08996 * 109.47332 * 62.33585 * 1 2 3 23 23 H 1.09001 * 109.46601 * 182.33510 * 1 2 3 24 24 H 1.09002 * 109.47237 * 302.33040 * 1 2 3 25 25 H 1.09004 * 109.47263 * 240.00252 * 2 1 3 26 26 H 1.09000 * 109.47786 * 120.00125 * 2 1 3 27 27 H 1.08998 * 109.47302 * 55.38330 * 4 3 2 28 28 H 1.09004 * 109.47216 * 175.38958 * 4 3 2 29 29 H 0.97001 * 120.00092 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.47191 * 179.97438 * 15 13 3 31 31 H 1.08998 * 109.47783 * 300.00267 * 15 13 3 32 32 H 1.09004 * 109.47181 * 60.00555 * 15 13 3 33 33 H 1.09004 * 109.46919 * 270.18049 * 21 20 19 34 34 H 1.09000 * 109.46929 * 30.18026 * 21 20 19 35 35 H 1.08999 * 109.47407 * 150.17891 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6117 2.0876 -1.2240 5 6 2.2699 1.4427 -2.4164 6 1 2.9803 0.6417 -2.2736 7 6 1.9653 1.8750 -3.6897 8 7 2.5401 1.3125 -4.7303 9 14 0.7372 3.2607 -3.9367 10 1 1.4521 4.5622 -3.9338 11 1 0.0424 3.0804 -5.2367 12 1 -0.2594 3.2409 -2.8359 13 6 1.5636 2.1046 1.1968 14 1 0.4763 2.1802 1.1830 15 6 2.1724 3.5082 1.2107 16 6 1.9995 1.3557 2.4297 17 7 3.1821 0.8363 2.6526 18 7 3.1603 0.2813 3.8152 19 7 1.9945 0.4336 4.3399 20 7 1.2520 1.0961 3.5186 21 6 -0.1436 1.4884 3.7297 22 1 -0.3634 0.4771 -0.9101 23 1 -0.3632 -1.0268 0.0419 24 1 -0.3634 0.5496 0.8684 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.5286 2.0305 -1.3319 28 1 1.9162 3.1324 -1.1619 29 1 2.3255 1.6164 -5.6261 30 1 1.8337 4.0423 2.0986 31 1 3.2597 3.4326 1.2245 32 1 1.8570 4.0499 0.3190 33 1 -0.8019 0.7037 3.3569 34 1 -0.3221 1.6371 4.7946 35 1 -0.3451 2.4164 3.1945 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330938051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:07 Heat of formation + Delta-G solvation = 132.385451 kcal Electronic energy + Delta-G solvation = -17925.979267 eV Core-core repulsion = 15190.676992 eV Total energy + Delta-G solvation = -2735.302276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.01679 -38.20006 -35.56363 -33.32927 -32.32798 -31.05263 -29.20131 -28.39251 -26.87245 -24.39692 -23.17114 -22.83688 -21.48628 -19.12698 -17.46327 -17.24202 -16.82727 -15.58416 -15.25255 -14.70194 -14.09770 -13.99028 -13.86465 -13.35719 -12.88115 -12.59653 -12.43472 -12.19124 -12.06242 -11.96215 -11.62037 -11.28670 -11.12409 -10.88145 -10.76409 -10.69683 -10.47037 -10.18212 -10.05497 -9.74243 -9.31084 -8.61806 -7.52811 -6.09588 -4.07452 1.34908 2.02967 2.47976 3.21747 3.27387 3.30257 4.04168 4.14629 4.34897 4.44170 4.66192 4.86802 4.96887 5.20709 5.23442 5.30745 5.49230 5.56525 5.69882 5.72465 5.82477 5.87280 5.95711 6.14879 6.22814 6.37577 6.41026 6.65632 6.81479 6.91124 7.47381 7.72386 7.86600 8.57725 8.81969 9.00983 9.50461 11.03460 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037085 B = 0.006957 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.834829 B = 4023.834819 C = 4120.134050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.503 5.503 4 C 0.157 3.843 5 C -0.508 4.508 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.897 5.897 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.158 3.842 14 H 0.057 0.943 15 C -0.144 4.144 16 C 0.207 3.793 17 N -0.273 5.273 18 N -0.083 5.083 19 N -0.110 5.110 20 N -0.316 5.316 21 C 0.079 3.921 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.035 0.965 25 H 0.098 0.902 26 H 0.050 0.950 27 H -0.003 1.003 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 3.430 14.014 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.228 5.228 4 C 0.031 3.969 5 C -0.546 4.546 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.698 3.302 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.045 3.955 14 H 0.074 0.926 15 C -0.202 4.202 16 C -0.072 4.072 17 N -0.122 5.122 18 N -0.077 5.077 19 N -0.095 5.095 20 N -0.118 5.118 21 C -0.063 4.063 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.015 0.985 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.709 2.709 14.609 16.739 hybrid contribution -2.430 1.150 -0.664 2.770 sum -10.139 3.860 13.946 17.669 Atomic orbital electron populations 1.22420 0.99452 1.01400 1.01441 1.22065 0.91708 0.90604 1.02621 1.62210 1.58643 1.01653 1.00270 1.20379 0.94363 0.94891 0.87253 1.20965 1.25305 1.20228 0.88123 0.89884 1.24875 0.95972 0.96377 0.95939 1.69886 1.43184 1.42095 0.98428 0.86939 0.82130 0.83345 0.77790 1.20051 1.21198 1.19285 1.20102 0.97006 0.93008 0.85353 0.92570 1.21923 1.03361 0.92972 1.01973 1.26186 0.88111 1.00317 0.92568 1.75165 1.17292 1.11380 1.08355 1.78638 1.10299 1.16269 1.02479 1.78801 0.99885 1.12636 1.18202 1.48419 1.13896 1.37041 1.12473 1.22346 0.75267 1.02915 1.05773 0.91109 0.92785 0.94576 0.88412 0.93134 0.98495 0.94972 0.92595 0.92986 0.90284 0.90173 0.88661 0.87605 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 9.23 37.16 0.34 -2.63 16 2 C 0.06 1.10 5.56 -3.82 -0.02 1.08 16 3 N -0.50 -9.90 4.57 -229.47 -1.05 -10.95 16 4 C 0.16 3.44 3.39 -4.97 -0.02 3.43 16 5 C -0.51 -13.68 8.92 -34.44 -0.31 -13.99 16 6 H 0.08 2.50 7.44 -52.48 -0.39 2.11 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 9 Si 0.87 20.20 27.56 -169.99 -4.68 15.51 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -5.82 6.42 56.52 0.36 -5.45 16 13 C 0.16 2.45 1.87 -68.87 -0.13 2.32 16 14 H 0.06 0.75 5.55 -51.93 -0.29 0.46 16 15 C -0.14 -2.04 8.96 37.16 0.33 -1.71 16 16 C 0.21 3.27 5.35 -155.43 -0.83 2.44 16 17 N -0.27 -5.17 12.06 32.70 0.39 -4.78 16 18 N -0.08 -1.52 13.43 60.35 0.81 -0.71 16 19 N -0.11 -1.72 13.29 60.35 0.80 -0.92 16 20 N -0.32 -4.16 3.75 -65.03 -0.24 -4.40 16 21 C 0.08 0.56 11.04 59.85 0.66 1.23 16 22 H 0.07 1.24 6.49 -51.93 -0.34 0.90 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.48 6.39 -51.93 -0.33 0.15 16 25 H 0.10 2.10 6.77 -51.93 -0.35 1.75 16 26 H 0.05 0.95 6.72 -51.93 -0.35 0.60 16 27 H 0.00 -0.05 4.96 -51.93 -0.26 -0.31 16 28 H 0.03 0.70 5.53 -51.93 -0.29 0.41 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.14 6.23 -51.93 -0.32 0.82 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.54 7.41 -51.93 -0.39 0.16 16 LS Contribution 281.55 15.07 4.24 4.24 Total: -1.00 -32.27 281.55 -3.61 -35.88 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.59 Total: -1.97 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.07 Total: -5.99 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 1.49 Total: -47.67 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.68 Total: 15.51 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.27 -3.61 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330938051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.266 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds