Wall clock time and date at job start Sun Mar 29 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47041 * 2 1 4 4 C 1.46903 * 110.99675 * 296.81668 * 3 2 1 5 5 C 1.50700 * 109.47369 * 295.38512 * 4 3 2 6 6 H 1.08009 * 119.99707 * 355.60743 * 5 4 3 7 7 C 1.37871 * 120.00243 * 175.60677 * 5 4 3 8 8 N 1.31517 * 120.00035 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00064 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47403 * 89.99759 * 9 7 5 11 11 H 1.48500 * 109.47132 * 209.99959 * 9 7 5 12 12 H 1.48497 * 109.46936 * 329.99783 * 9 7 5 13 13 C 1.46902 * 110.99799 * 60.76669 * 3 2 1 14 14 H 1.09000 * 109.46971 * 296.04892 * 13 3 2 15 15 C 1.52997 * 109.46692 * 176.04763 * 13 3 2 16 16 C 1.50696 * 109.46918 * 56.04946 * 13 3 2 17 17 N 1.31070 * 126.65940 * 45.02337 * 16 13 3 18 18 N 1.28845 * 107.99061 * 179.97438 * 17 16 13 19 19 N 1.28745 * 109.39578 * 359.97438 * 18 17 16 20 20 N 1.29019 * 108.80887 * 359.74564 * 19 18 17 21 21 C 1.46500 * 126.44188 * 180.24493 * 20 19 18 22 22 H 1.08996 * 109.47332 * 62.33585 * 1 2 3 23 23 H 1.09001 * 109.46601 * 182.33510 * 1 2 3 24 24 H 1.09002 * 109.47237 * 302.33040 * 1 2 3 25 25 H 1.09004 * 109.47263 * 240.00252 * 2 1 3 26 26 H 1.09000 * 109.47786 * 120.00125 * 2 1 3 27 27 H 1.08998 * 109.47302 * 55.38330 * 4 3 2 28 28 H 1.09004 * 109.47216 * 175.38958 * 4 3 2 29 29 H 0.97001 * 120.00092 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.47191 * 179.97438 * 15 13 3 31 31 H 1.08998 * 109.47783 * 300.00267 * 15 13 3 32 32 H 1.09004 * 109.47181 * 60.00555 * 15 13 3 33 33 H 1.09004 * 109.46919 * 270.18049 * 21 20 19 34 34 H 1.09000 * 109.46929 * 30.18026 * 21 20 19 35 35 H 1.08999 * 109.47407 * 150.17891 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6117 2.0876 -1.2240 5 6 2.2699 1.4427 -2.4164 6 1 2.9803 0.6417 -2.2736 7 6 1.9653 1.8750 -3.6897 8 7 2.5401 1.3125 -4.7303 9 14 0.7372 3.2607 -3.9367 10 1 1.4521 4.5622 -3.9338 11 1 0.0424 3.0804 -5.2367 12 1 -0.2594 3.2409 -2.8359 13 6 1.5636 2.1046 1.1968 14 1 0.4763 2.1802 1.1830 15 6 2.1724 3.5082 1.2107 16 6 1.9995 1.3557 2.4297 17 7 3.1821 0.8363 2.6526 18 7 3.1603 0.2813 3.8152 19 7 1.9945 0.4336 4.3399 20 7 1.2520 1.0961 3.5186 21 6 -0.1436 1.4884 3.7297 22 1 -0.3634 0.4771 -0.9101 23 1 -0.3632 -1.0268 0.0419 24 1 -0.3634 0.5496 0.8684 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.5286 2.0305 -1.3319 28 1 1.9162 3.1324 -1.1619 29 1 2.3255 1.6164 -5.6261 30 1 1.8337 4.0423 2.0986 31 1 3.2597 3.4326 1.2245 32 1 1.8570 4.0499 0.3190 33 1 -0.8019 0.7037 3.3569 34 1 -0.3221 1.6371 4.7946 35 1 -0.3451 2.4164 3.1945 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330938051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:07 Heat of formation + Delta-G solvation = 106.851136 kcal Electronic energy + Delta-G solvation = -17927.086518 eV Core-core repulsion = 15190.676992 eV Total energy + Delta-G solvation = -2736.409527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.20414 -39.63778 -36.62145 -34.98296 -34.02747 -32.31415 -30.79635 -29.23820 -28.42120 -25.71973 -24.65420 -24.09788 -22.88247 -20.60667 -18.95852 -18.39353 -18.28579 -16.99409 -16.67333 -16.17636 -15.85387 -15.16092 -14.60161 -14.53923 -14.45676 -13.87811 -13.84806 -13.47645 -13.25617 -13.13161 -13.08650 -12.66461 -12.54033 -12.40283 -12.20636 -11.95169 -11.83506 -11.78863 -11.65148 -11.39076 -10.95743 -10.70040 -9.00043 -8.21006 -6.24814 0.20486 1.10110 1.20663 1.40689 1.43288 1.52515 2.40482 2.90346 2.95572 3.13276 3.45693 3.83343 4.03262 4.10807 4.21664 4.25584 4.35490 4.37704 4.47730 4.54664 4.58664 4.77565 4.81009 4.89741 4.92073 5.07509 5.18980 5.24499 5.28544 5.35884 5.61749 5.98386 6.29149 6.65068 6.82417 7.37801 7.59929 8.96186 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037085 B = 0.006957 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.834829 B = 4023.834819 C = 4120.134050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 N -0.531 5.531 4 C 0.170 3.830 5 C -0.513 4.513 6 H 0.028 0.972 7 C 0.004 3.996 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.290 1.290 12 H -0.233 1.233 13 C 0.160 3.840 14 H 0.095 0.905 15 C -0.143 4.143 16 C 0.204 3.796 17 N -0.315 5.315 18 N -0.117 5.117 19 N -0.105 5.105 20 N -0.296 5.296 21 C 0.057 3.943 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.649 5.653 15.894 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.064 4.064 3 N -0.255 5.255 4 C 0.044 3.956 5 C -0.551 4.551 6 H 0.046 0.954 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.216 1.216 12 H -0.156 1.156 13 C 0.048 3.952 14 H 0.112 0.888 15 C -0.201 4.201 16 C -0.075 4.075 17 N -0.165 5.165 18 N -0.111 5.111 19 N -0.092 5.092 20 N -0.100 5.100 21 C -0.082 4.082 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.180 4.931 16.538 20.562 hybrid contribution -1.332 0.370 -1.163 1.807 sum -12.512 5.301 15.375 20.519 Atomic orbital electron populations 1.22313 0.96417 1.02854 1.02188 1.21860 0.94164 0.90132 1.00279 1.61963 1.60328 1.02067 1.01185 1.20114 0.94364 0.94892 0.86280 1.21222 1.24299 1.18906 0.90670 0.95388 1.25898 0.98414 0.99590 0.95314 1.70083 1.45711 1.44607 0.99113 0.85737 0.79731 0.79176 0.78464 1.19062 1.21589 1.15580 1.20239 0.99037 0.92818 0.83072 0.88809 1.21945 1.01783 0.92505 1.03914 1.26077 0.87791 1.00343 0.93293 1.75068 1.19675 1.12670 1.09056 1.78617 1.11733 1.17900 1.02852 1.78690 0.99597 1.12415 1.18453 1.48786 1.15273 1.35025 1.10869 1.23052 0.71966 1.04861 1.08289 0.92530 0.91414 0.91102 0.92803 0.93503 0.96981 0.93705 0.92651 0.89244 0.92847 0.89922 0.86667 0.85190 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.16 9.23 71.98 0.66 -4.50 16 2 C 0.06 2.41 5.56 86.30 0.48 2.89 16 3 N -0.53 -20.42 4.57 -879.91 -4.03 -24.45 16 4 C 0.17 7.21 3.39 85.56 0.29 7.50 16 5 C -0.51 -28.46 8.92 25.60 0.23 -28.23 16 6 H 0.03 1.81 7.44 -2.91 -0.02 1.79 16 7 C 0.00 0.25 5.47 84.65 0.46 0.71 16 8 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 9 Si 0.95 40.73 27.56 68.60 1.89 42.63 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.23 -8.65 6.42 99.48 0.64 -8.01 16 13 C 0.16 4.45 1.87 44.17 0.08 4.53 16 14 H 0.09 1.94 5.55 -2.39 -0.01 1.93 16 15 C -0.14 -3.60 8.96 71.98 0.65 -2.95 16 16 C 0.20 5.99 5.35 138.13 0.74 6.73 16 17 N -0.32 -11.88 12.06 -50.45 -0.61 -12.49 16 18 N -0.12 -4.28 13.43 37.01 0.50 -3.78 16 19 N -0.11 -3.10 13.29 37.02 0.49 -2.61 16 20 N -0.30 -6.79 3.75 -359.64 -1.35 -8.13 16 21 C 0.06 0.51 11.04 127.77 1.41 1.92 16 22 H 0.06 1.81 6.49 -2.39 -0.02 1.79 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.52 6.39 -2.39 -0.02 1.51 16 25 H 0.05 2.46 6.77 -2.39 -0.02 2.44 16 26 H 0.05 1.78 6.72 -2.39 -0.02 1.76 16 27 H 0.01 0.50 4.96 -2.39 -0.01 0.49 16 28 H 0.05 1.82 5.53 -2.39 -0.01 1.80 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 2.04 6.23 -2.38 -0.01 2.02 16 33 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.13 0.49 7.41 -2.39 -0.02 0.47 16 Total: -1.00 -75.72 281.55 3.23 -72.48 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.03 Total: 6.45 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.00 Total: -11.40 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.69 Total: -110.17 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.89 Total: 42.63 kcal Total: -75.72 3.23 -72.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330938051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.336 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds