Wall clock time and date at job start Sun Mar 29 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47291 * 2 1 4 4 C 1.46907 * 110.99690 * 76.39248 * 3 2 1 5 5 C 1.50702 * 109.47264 * 282.10941 * 4 3 2 6 6 H 1.08003 * 119.99727 * 354.59269 * 5 4 3 7 7 C 1.37878 * 120.00004 * 174.58525 * 5 4 3 8 8 N 1.31515 * 119.99661 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00035 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47019 * 60.00379 * 9 7 5 11 11 H 1.48494 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46824 * 300.00636 * 9 7 5 13 13 C 1.46901 * 111.00455 * 200.34706 * 3 2 1 14 14 H 1.08999 * 109.46918 * 191.79971 * 13 3 2 15 15 C 1.53001 * 109.46765 * 311.80034 * 13 3 2 16 16 C 1.50696 * 109.46895 * 71.79857 * 13 3 2 17 17 N 1.31076 * 126.66221 * 317.88356 * 16 13 3 18 18 N 1.28842 * 107.99162 * 179.89846 * 17 16 13 19 19 N 1.28742 * 109.39545 * 0.37396 * 18 17 16 20 20 N 1.29015 * 108.80909 * 359.76685 * 19 18 17 21 21 C 1.46504 * 126.43893 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47069 * 172.84783 * 1 2 3 23 23 H 1.09004 * 109.47316 * 292.85252 * 1 2 3 24 24 H 1.09004 * 109.47373 * 52.85132 * 1 2 3 25 25 H 1.08998 * 109.47705 * 120.00351 * 2 1 3 26 26 H 1.08998 * 109.47206 * 240.00344 * 2 1 3 27 27 H 1.08996 * 109.46728 * 42.10968 * 4 3 2 28 28 H 1.09004 * 109.47033 * 162.11255 * 4 3 2 29 29 H 0.97002 * 119.99523 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46687 * 179.97438 * 15 13 3 31 31 H 1.08997 * 109.47004 * 299.99638 * 15 13 3 32 32 H 1.08999 * 109.47454 * 60.00265 * 15 13 3 33 33 H 1.08999 * 109.47287 * 270.02980 * 21 20 19 34 34 H 1.08999 * 109.46531 * 30.02969 * 21 20 19 35 35 H 1.08995 * 109.47422 * 150.02468 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8909 1.9888 1.3330 5 6 0.4575 2.3915 1.5658 6 1 -0.2661 2.2971 0.7695 7 6 0.0696 2.8801 2.7954 8 7 0.9508 2.9952 3.7649 9 14 -1.7073 3.3785 3.0842 10 1 -2.5917 2.2051 2.8694 11 1 -1.8638 3.8684 4.4773 12 1 -2.0789 4.4587 2.1353 13 6 3.4075 1.4528 -0.4768 14 1 3.8139 2.4433 -0.2724 15 6 4.2471 0.3977 0.2461 16 6 3.4420 1.1921 -1.9607 17 7 2.7607 0.2806 -2.6113 18 7 3.0614 0.3753 -3.8605 19 7 3.9227 1.3183 -4.0227 20 7 4.1828 1.8461 -2.8745 21 6 5.1107 2.9495 -2.6142 22 1 -0.3633 -1.0197 -0.1279 23 1 -0.3634 0.3991 0.9470 24 1 -0.3634 0.6206 -0.8191 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.1927 1.2653 2.0903 28 1 2.5304 2.8693 1.3964 29 1 0.6779 3.3386 4.6300 30 1 5.2768 0.4477 -0.1081 31 1 4.2221 0.5863 1.3193 32 1 3.8407 -0.5928 0.0416 33 1 6.1043 2.5490 -2.4132 34 1 5.1518 3.6029 -3.4857 35 1 4.7664 3.5177 -1.7501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330938052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:09 Heat of formation + Delta-G solvation = 127.762036 kcal Electronic energy + Delta-G solvation = -17771.213766 eV Core-core repulsion = 15035.711004 eV Total energy + Delta-G solvation = -2735.502762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.91147 -37.92896 -35.49764 -33.33176 -32.13461 -30.68096 -28.87110 -28.25465 -26.46006 -24.54289 -23.16457 -22.25737 -21.57998 -19.28410 -17.35238 -17.02918 -16.56910 -15.07031 -15.03393 -14.41824 -14.20946 -13.74479 -13.61351 -13.43671 -12.75951 -12.52278 -12.16875 -12.00560 -11.90322 -11.45661 -11.30388 -10.96624 -10.93286 -10.78917 -10.69589 -10.64331 -10.44014 -10.09367 -9.83405 -9.39817 -9.21390 -8.43091 -7.43025 -6.06913 -4.05675 1.45857 2.14590 2.53976 3.32028 3.36021 3.39714 4.16276 4.31845 4.40763 4.71353 4.76379 4.93854 5.09742 5.28072 5.29755 5.41124 5.58252 5.78223 5.90541 5.98893 6.11481 6.25611 6.28429 6.36816 6.50938 6.76213 6.97618 7.05261 7.26596 7.40902 7.78252 8.00406 8.09869 8.44522 8.88422 9.01037 9.56686 11.03461 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032905 B = 0.006663 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.727966 B = 4201.022696 C = 4400.750618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.523 5.523 4 C 0.195 3.805 5 C -0.502 4.502 6 H 0.071 0.929 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.158 3.842 14 H 0.099 0.901 15 C -0.177 4.177 16 C 0.217 3.783 17 N -0.291 5.291 18 N -0.084 5.084 19 N -0.111 5.111 20 N -0.314 5.314 21 C 0.080 3.920 22 H 0.034 0.966 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.025 0.975 26 H 0.079 0.921 27 H 0.005 0.995 28 H 0.022 0.978 29 H 0.261 0.739 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -0.862 -7.271 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 N -0.248 5.248 4 C 0.071 3.929 5 C -0.540 4.540 6 H 0.089 0.911 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.045 3.955 14 H 0.117 0.883 15 C -0.237 4.237 16 C -0.062 4.062 17 N -0.140 5.140 18 N -0.078 5.078 19 N -0.097 5.097 20 N -0.116 5.116 21 C -0.062 4.062 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.023 0.977 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.517 -1.217 -8.592 12.160 hybrid contribution -0.001 0.593 1.500 1.613 sum 8.517 -0.624 -7.092 11.100 Atomic orbital electron populations 1.21905 0.95145 0.99015 1.04022 1.22138 0.96757 0.88476 0.99778 1.62227 1.12926 1.18915 1.30750 1.19845 0.98057 0.93630 0.81413 1.21223 0.94436 1.41164 0.97191 0.91084 1.24970 0.97590 0.96017 0.96052 1.69936 1.33953 1.46697 1.03469 0.86597 0.84997 0.79083 0.77007 1.20118 1.21430 1.20253 1.20193 0.93459 0.99819 0.82003 0.88310 1.22470 0.99092 1.00156 1.02009 1.26346 0.91370 0.91309 0.97182 1.74977 1.20668 1.19801 0.98566 1.78565 1.07865 1.10918 1.10413 1.78775 1.15364 1.08849 1.06714 1.48342 1.31366 1.26782 1.05078 1.22359 0.91886 0.86693 1.05284 0.94739 0.89884 0.93115 0.95696 0.90323 0.97726 0.95973 0.92900 0.92941 0.90237 0.91272 0.88731 0.87751 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.80 37.15 0.33 -2.57 16 2 C 0.06 1.11 4.10 -3.83 -0.02 1.10 16 3 N -0.52 -10.63 4.32 -229.47 -0.99 -11.63 16 4 C 0.19 4.63 4.26 -4.97 -0.02 4.61 16 5 C -0.50 -13.26 7.09 -34.44 -0.24 -13.50 16 6 H 0.07 1.90 6.34 -52.48 -0.33 1.56 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 9 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.16 2.56 2.64 -68.87 -0.18 2.38 16 14 H 0.10 1.42 6.43 -51.93 -0.33 1.09 16 15 C -0.18 -2.53 8.45 37.16 0.31 -2.21 16 16 C 0.22 3.55 6.86 -155.43 -1.07 2.48 16 17 N -0.29 -5.47 9.91 32.70 0.32 -5.15 16 18 N -0.08 -1.56 13.43 60.35 0.81 -0.75 16 19 N -0.11 -1.81 13.29 60.35 0.80 -1.01 16 20 N -0.31 -4.37 3.75 -65.03 -0.24 -4.61 16 21 C 0.08 0.63 11.23 59.85 0.67 1.30 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.08 1.87 5.70 -51.93 -0.30 1.57 16 24 H 0.05 1.06 8.13 -51.93 -0.42 0.63 16 25 H 0.02 0.49 7.09 -51.93 -0.37 0.12 16 26 H 0.08 1.50 5.16 -51.93 -0.27 1.24 16 27 H 0.00 0.13 7.34 -51.93 -0.38 -0.26 16 28 H 0.02 0.54 7.61 -51.93 -0.40 0.15 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.19 7.47 -51.93 -0.39 0.80 16 32 H 0.07 1.04 6.57 -51.93 -0.34 0.70 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.72 7.01 -51.93 -0.36 0.36 16 LS Contribution 283.45 15.07 4.27 4.27 Total: -1.00 -31.31 283.45 -4.34 -35.65 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.72 Total: -3.09 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.31 Total: -5.05 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 1.44 Total: -47.86 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.31 -4.34 -35.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330938052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.416 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds