Wall clock time and date at job start Sun Mar 29 2020 22:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47291 * 2 1 4 4 C 1.46907 * 110.99690 * 76.39248 * 3 2 1 5 5 C 1.50702 * 109.47264 * 282.10941 * 4 3 2 6 6 H 1.08003 * 119.99727 * 354.59269 * 5 4 3 7 7 C 1.37878 * 120.00004 * 174.58525 * 5 4 3 8 8 N 1.31515 * 119.99661 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00035 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47019 * 60.00379 * 9 7 5 11 11 H 1.48494 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46824 * 300.00636 * 9 7 5 13 13 C 1.46901 * 111.00455 * 200.34706 * 3 2 1 14 14 H 1.08999 * 109.46918 * 191.79971 * 13 3 2 15 15 C 1.53001 * 109.46765 * 311.80034 * 13 3 2 16 16 C 1.50696 * 109.46895 * 71.79857 * 13 3 2 17 17 N 1.31076 * 126.66221 * 317.88356 * 16 13 3 18 18 N 1.28842 * 107.99162 * 179.89846 * 17 16 13 19 19 N 1.28742 * 109.39545 * 0.37396 * 18 17 16 20 20 N 1.29015 * 108.80909 * 359.76685 * 19 18 17 21 21 C 1.46504 * 126.43893 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47069 * 172.84783 * 1 2 3 23 23 H 1.09004 * 109.47316 * 292.85252 * 1 2 3 24 24 H 1.09004 * 109.47373 * 52.85132 * 1 2 3 25 25 H 1.08998 * 109.47705 * 120.00351 * 2 1 3 26 26 H 1.08998 * 109.47206 * 240.00344 * 2 1 3 27 27 H 1.08996 * 109.46728 * 42.10968 * 4 3 2 28 28 H 1.09004 * 109.47033 * 162.11255 * 4 3 2 29 29 H 0.97002 * 119.99523 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.46687 * 179.97438 * 15 13 3 31 31 H 1.08997 * 109.47004 * 299.99638 * 15 13 3 32 32 H 1.08999 * 109.47454 * 60.00265 * 15 13 3 33 33 H 1.08999 * 109.47287 * 270.02980 * 21 20 19 34 34 H 1.08999 * 109.46531 * 30.02969 * 21 20 19 35 35 H 1.08995 * 109.47422 * 150.02468 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8909 1.9888 1.3330 5 6 0.4575 2.3915 1.5658 6 1 -0.2661 2.2971 0.7695 7 6 0.0696 2.8801 2.7954 8 7 0.9508 2.9952 3.7649 9 14 -1.7073 3.3785 3.0842 10 1 -2.5917 2.2051 2.8694 11 1 -1.8638 3.8684 4.4773 12 1 -2.0789 4.4587 2.1353 13 6 3.4075 1.4528 -0.4768 14 1 3.8139 2.4433 -0.2724 15 6 4.2471 0.3977 0.2461 16 6 3.4420 1.1921 -1.9607 17 7 2.7607 0.2806 -2.6113 18 7 3.0614 0.3753 -3.8605 19 7 3.9227 1.3183 -4.0227 20 7 4.1828 1.8461 -2.8745 21 6 5.1107 2.9495 -2.6142 22 1 -0.3633 -1.0197 -0.1279 23 1 -0.3634 0.3991 0.9470 24 1 -0.3634 0.6206 -0.8191 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.1927 1.2653 2.0903 28 1 2.5304 2.8693 1.3964 29 1 0.6779 3.3386 4.6300 30 1 5.2768 0.4477 -0.1081 31 1 4.2221 0.5863 1.3193 32 1 3.8407 -0.5928 0.0416 33 1 6.1043 2.5490 -2.4132 34 1 5.1518 3.6029 -3.4857 35 1 4.7664 3.5177 -1.7501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330938052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:09 Heat of formation + Delta-G solvation = 105.588576 kcal Electronic energy + Delta-G solvation = -17772.175279 eV Core-core repulsion = 15035.711004 eV Total energy + Delta-G solvation = -2736.464275 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.15433 -39.45080 -36.61470 -35.08767 -33.80302 -32.05896 -30.49785 -29.18739 -28.22007 -25.86018 -24.64468 -23.82252 -23.00246 -20.78743 -18.72235 -18.22575 -18.18261 -16.73228 -16.60185 -15.98906 -15.74551 -14.99536 -14.68798 -14.53376 -14.19761 -13.99338 -13.64812 -13.37279 -13.18011 -13.02700 -12.87379 -12.70188 -12.65730 -12.29889 -12.23715 -12.10218 -11.82562 -11.72016 -11.29823 -11.14174 -10.94097 -10.47776 -9.06972 -8.12891 -6.17184 0.24849 1.13501 1.22705 1.44848 1.45267 1.53089 2.44333 2.95546 3.13143 3.20071 3.48171 3.80424 4.05447 4.25094 4.30150 4.32334 4.46665 4.59625 4.64757 4.66330 4.76704 4.82066 4.93737 5.09478 5.15746 5.18146 5.29165 5.29825 5.43885 5.67491 5.77837 6.14282 6.36527 6.61734 6.95478 7.48862 7.60801 8.96534 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032905 B = 0.006663 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.727966 B = 4201.022696 C = 4400.750618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.062 3.938 3 N -0.536 5.536 4 C 0.213 3.787 5 C -0.510 4.510 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.159 3.841 14 H 0.119 0.881 15 C -0.169 4.169 16 C 0.210 3.790 17 N -0.319 5.319 18 N -0.114 5.114 19 N -0.108 5.108 20 N -0.297 5.297 21 C 0.061 3.939 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.088 0.912 27 H -0.017 1.017 28 H 0.014 0.986 29 H 0.262 0.738 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -0.283 -7.848 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.066 4.066 3 N -0.260 5.260 4 C 0.087 3.913 5 C -0.548 4.548 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.572 5.572 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.046 3.954 14 H 0.137 0.863 15 C -0.229 4.229 16 C -0.069 4.069 17 N -0.168 5.168 18 N -0.108 5.108 19 N -0.095 5.095 20 N -0.100 5.100 21 C -0.077 4.077 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.106 0.894 27 H 0.000 1.000 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.429 -0.628 -9.188 13.181 hybrid contribution -0.183 0.456 1.615 1.688 sum 9.246 -0.172 -7.573 11.953 Atomic orbital electron populations 1.21818 0.95718 1.00029 1.01973 1.22091 0.96264 0.88331 0.99931 1.62050 1.16243 1.19158 1.28577 1.19474 0.96394 0.92762 0.82642 1.21518 0.95711 1.40580 0.97010 0.91781 1.25665 1.01081 0.96233 0.95985 1.70031 1.35581 1.47781 1.03811 0.85704 0.80843 0.78780 0.76928 1.19744 1.21060 1.19862 1.20288 0.91443 1.01658 0.81966 0.86285 1.22375 1.00615 0.98786 1.01143 1.26157 0.91976 0.91557 0.97200 1.74860 1.21817 1.21165 0.98964 1.78542 1.09283 1.12361 1.10591 1.78682 1.14762 1.08444 1.07576 1.48706 1.30814 1.26734 1.03706 1.22988 0.92184 0.85673 1.06895 0.92443 0.92462 0.94181 0.96049 0.89421 0.99963 0.96753 0.92907 0.89610 0.91208 0.92257 0.85561 0.85766 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.80 71.98 0.63 -4.93 16 2 C 0.06 2.41 4.10 86.30 0.35 2.77 16 3 N -0.54 -21.49 4.32 -879.92 -3.80 -25.29 16 4 C 0.21 10.14 4.26 85.56 0.36 10.50 16 5 C -0.51 -27.09 7.09 25.60 0.18 -26.91 16 6 H 0.06 3.44 6.34 -2.91 -0.02 3.42 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -52.85 13.29 21.45 0.28 -52.56 16 9 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.16 4.86 2.64 44.17 0.12 4.98 16 14 H 0.12 3.13 6.43 -2.39 -0.02 3.11 16 15 C -0.17 -4.52 8.45 71.98 0.61 -3.92 16 16 C 0.21 6.50 6.86 138.13 0.95 7.45 16 17 N -0.32 -11.67 9.91 -50.45 -0.50 -12.17 16 18 N -0.11 -4.16 13.43 37.01 0.50 -3.66 16 19 N -0.11 -3.34 13.29 37.02 0.49 -2.84 16 20 N -0.30 -7.50 3.75 -359.64 -1.35 -8.84 16 21 C 0.06 0.74 11.23 127.77 1.43 2.17 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.06 2.60 5.70 -2.39 -0.01 2.58 16 24 H 0.04 1.66 8.13 -2.38 -0.02 1.64 16 25 H 0.02 0.84 7.09 -2.39 -0.02 0.83 16 26 H 0.09 3.31 5.16 -2.39 -0.01 3.29 16 27 H -0.02 -0.90 7.34 -2.39 -0.02 -0.92 16 28 H 0.01 0.70 7.61 -2.39 -0.02 0.69 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.07 2.01 7.47 -2.39 -0.02 2.00 16 32 H 0.06 1.70 6.57 -2.39 -0.02 1.69 16 33 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.18 7.01 -2.39 -0.02 1.16 16 Total: -1.00 -67.40 283.45 3.84 -63.56 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.09 Total: 3.55 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.10 Total: -6.97 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.38 Total: -105.38 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.40 3.84 -63.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330938052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.144 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds