Wall clock time and date at job start Sun Mar 29 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47115 * 2 1 4 4 C 1.46509 * 119.99880 * 268.13766 * 3 2 1 5 5 C 1.50695 * 109.47110 * 250.78782 * 4 3 2 6 6 H 1.07996 * 120.00287 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99816 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46851 * 89.99710 * 9 7 5 11 11 H 1.48501 * 109.47276 * 209.99677 * 9 7 5 12 12 H 1.48494 * 109.47208 * 329.99838 * 9 7 5 13 13 C 1.34773 * 120.00550 * 88.13734 * 3 2 1 14 14 O 1.21617 * 119.99565 * 4.25941 * 13 3 2 15 15 C 1.47100 * 120.00451 * 184.25096 * 13 3 2 16 16 C 1.32086 * 118.87985 * 211.54581 * 15 13 3 17 17 C 1.50275 * 122.57757 * 180.65032 * 16 15 13 18 18 O 1.43058 * 110.00560 * 343.87499 * 17 16 15 19 19 C 1.43272 * 112.91782 * 50.93670 * 18 17 16 20 20 C 1.50422 * 118.87455 * 31.57186 * 15 13 3 21 21 H 1.08999 * 109.47510 * 64.72362 * 1 2 3 22 22 H 1.09007 * 109.47333 * 184.72085 * 1 2 3 23 23 H 1.08994 * 109.47370 * 304.72075 * 1 2 3 24 24 H 1.08997 * 109.47620 * 239.99482 * 2 1 3 25 25 H 1.09005 * 109.46988 * 119.99604 * 2 1 3 26 26 H 1.09004 * 109.46857 * 10.78833 * 4 3 2 27 27 H 1.09000 * 109.46840 * 130.78068 * 4 3 2 28 28 H 0.97004 * 119.99777 * 180.02562 * 8 7 5 29 29 H 1.07999 * 118.71057 * 0.37783 * 16 15 13 30 30 H 1.08996 * 109.36393 * 104.26894 * 17 16 15 31 31 H 1.09001 * 109.36491 * 223.88746 * 17 16 15 32 32 H 1.09004 * 109.63873 * 171.27737 * 19 18 17 33 33 H 1.08998 * 109.64108 * 50.66383 * 19 18 17 34 34 H 1.09000 * 109.45408 * 283.37696 * 20 15 13 35 35 H 1.09004 * 109.45195 * 43.31312 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3013 2.0580 -1.2681 5 6 3.7904 2.2274 -1.4257 6 1 4.4591 1.8673 -0.6579 7 6 4.2991 2.8430 -2.5496 8 7 3.4847 3.2820 -3.4844 9 14 6.1449 3.0537 -2.7447 10 1 6.7072 1.8694 -3.4424 11 1 6.4222 4.2756 -3.5416 12 1 6.7726 3.1833 -1.4052 13 6 2.2072 2.0292 1.1665 14 8 2.0468 1.4437 2.2203 15 6 2.6074 3.4447 1.1651 16 6 3.3679 3.8936 2.1474 17 6 3.8134 5.3260 2.2360 18 8 3.6260 5.9757 0.9753 19 6 2.3057 5.7995 0.4477 20 6 2.1362 4.3318 0.0454 21 1 -0.3634 0.4388 -0.9292 22 1 -0.3634 -1.0242 0.0846 23 1 -0.3634 0.5853 0.8446 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.9143 1.4602 -2.0934 27 1 1.8217 3.0369 -1.2725 28 1 3.8426 3.7148 -4.2753 29 1 3.6782 3.2050 2.9195 30 1 3.2311 5.8389 3.0014 31 1 4.8694 5.3602 2.5044 32 1 2.1725 6.4366 -0.4266 33 1 1.5695 6.0581 1.2087 34 1 2.7248 4.1303 -0.8496 35 1 1.0846 4.1306 -0.1590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330982555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:02 Heat of formation + Delta-G solvation = -53.579367 kcal Electronic energy + Delta-G solvation = -18100.851998 eV Core-core repulsion = 15292.900181 eV Total energy + Delta-G solvation = -2807.951817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75297 -38.12558 -35.34364 -33.57513 -32.58217 -30.80835 -30.05661 -27.12887 -25.62264 -23.73069 -22.97921 -22.41712 -19.39493 -17.76613 -16.86756 -16.11741 -15.95092 -15.30666 -14.96271 -14.61810 -14.21169 -14.07049 -13.33908 -13.22570 -12.86314 -12.45189 -12.22685 -12.04142 -11.93356 -11.60062 -11.25042 -11.00813 -10.94316 -10.64814 -10.51740 -10.15279 -10.01945 -9.75848 -9.41415 -8.84124 -8.51527 -8.38966 -7.68074 -6.19830 -4.25761 2.11079 3.25443 3.32715 3.37816 3.75147 4.03626 4.30663 4.37478 5.14044 5.18630 5.32327 5.44782 5.57019 5.62017 5.68171 5.71475 5.77365 5.84062 5.97787 6.13528 6.18551 6.20660 6.38902 6.58865 6.73944 6.83433 6.96137 7.18198 7.21960 7.49009 7.56710 7.77657 8.05364 8.30055 8.79312 9.01055 9.41492 10.86288 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.013044 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.356950 B = 2146.111247 C = 3275.357025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.590 5.590 4 C 0.209 3.791 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.553 3.447 14 O -0.578 6.578 15 C -0.104 4.104 16 C -0.164 4.164 17 C 0.096 3.904 18 O -0.376 6.376 19 C 0.061 3.939 20 C -0.137 4.137 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.266 0.734 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.150 0.850 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 2.116 5.534 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.320 5.320 4 C 0.090 3.910 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.343 3.657 14 O -0.461 6.461 15 C -0.107 4.107 16 C -0.183 4.183 17 C 0.019 3.981 18 O -0.295 6.295 19 C -0.015 4.015 20 C -0.173 4.173 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.167 0.833 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.344 1.994 5.744 6.939 hybrid contribution 0.864 -0.232 -0.216 0.921 sum -2.480 1.761 5.528 6.310 Atomic orbital electron populations 1.22119 0.96767 1.01289 1.01933 1.21288 0.93493 0.83976 1.02397 1.48194 1.62592 1.13151 1.08038 1.20263 0.96832 0.94644 0.79271 1.21430 0.91644 1.38837 1.05087 0.92280 1.24879 0.98291 0.94986 0.95331 1.69911 1.34688 1.39145 1.09209 0.86525 0.85198 0.77629 0.78445 1.20694 1.20925 1.19620 1.18423 0.76830 0.87052 0.83435 1.90671 1.54722 1.69010 1.31685 1.20744 0.99728 0.93823 0.96414 1.23232 0.98447 0.97992 0.98671 1.21391 1.01418 0.89006 0.86246 1.88154 1.31727 1.73619 1.35961 1.22715 0.83841 0.96802 0.98178 1.21825 1.02467 0.92795 1.00253 0.92585 0.92370 0.92809 0.90653 0.91107 0.94625 0.92120 0.92449 0.86187 0.92184 0.88184 0.88581 0.93839 0.83266 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.23 37.15 0.38 -2.20 16 2 C 0.11 2.09 6.09 -4.05 -0.02 2.06 16 3 N -0.59 -12.78 2.56 -176.46 -0.45 -13.23 16 4 C 0.21 4.89 4.81 -5.19 -0.02 4.87 16 5 C -0.53 -13.73 7.10 -34.44 -0.24 -13.97 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.07 1.78 5.16 -17.82 -0.09 1.69 16 8 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.55 12.35 7.14 -12.67 -0.09 12.26 16 14 O -0.58 -13.79 16.07 5.26 0.08 -13.70 16 15 C -0.10 -2.14 4.97 -103.09 -0.51 -2.66 16 16 C -0.16 -3.02 9.53 -36.44 -0.35 -3.37 16 17 C 0.10 1.50 7.04 35.80 0.25 1.75 16 18 O -0.38 -6.82 10.85 -35.23 -0.38 -7.20 16 19 C 0.06 1.02 6.88 37.22 0.26 1.28 16 20 C -0.14 -2.67 3.99 -27.96 -0.11 -2.78 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 1.34 7.98 -51.93 -0.41 0.93 16 25 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 26 H 0.04 0.87 7.88 -51.93 -0.41 0.46 16 27 H 0.06 1.42 3.73 -51.93 -0.19 1.22 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.12 2.19 7.65 -52.49 -0.40 1.79 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.15 3.43 4.41 -51.93 -0.23 3.20 16 35 H 0.07 1.36 7.43 -51.93 -0.39 0.97 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -29.15 286.13 -6.20 -35.35 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.92 Total: 2.75 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.56 Total: -1.07 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.29 Total: -36.28 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.30 Total: -20.91 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.15 -6.20 -35.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330982555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.229 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds