Wall clock time and date at job start Sun Mar 29 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47115 * 2 1 4 4 C 1.46509 * 119.99880 * 268.13766 * 3 2 1 5 5 C 1.50695 * 109.47110 * 250.78782 * 4 3 2 6 6 H 1.07996 * 120.00287 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99816 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46851 * 89.99710 * 9 7 5 11 11 H 1.48501 * 109.47276 * 209.99677 * 9 7 5 12 12 H 1.48494 * 109.47208 * 329.99838 * 9 7 5 13 13 C 1.34773 * 120.00550 * 88.13734 * 3 2 1 14 14 O 1.21617 * 119.99565 * 4.25941 * 13 3 2 15 15 C 1.47100 * 120.00451 * 184.25096 * 13 3 2 16 16 C 1.32086 * 118.87985 * 211.54581 * 15 13 3 17 17 C 1.50275 * 122.57757 * 180.65032 * 16 15 13 18 18 O 1.43058 * 110.00560 * 343.87499 * 17 16 15 19 19 C 1.43272 * 112.91782 * 50.93670 * 18 17 16 20 20 C 1.50422 * 118.87455 * 31.57186 * 15 13 3 21 21 H 1.08999 * 109.47510 * 64.72362 * 1 2 3 22 22 H 1.09007 * 109.47333 * 184.72085 * 1 2 3 23 23 H 1.08994 * 109.47370 * 304.72075 * 1 2 3 24 24 H 1.08997 * 109.47620 * 239.99482 * 2 1 3 25 25 H 1.09005 * 109.46988 * 119.99604 * 2 1 3 26 26 H 1.09004 * 109.46857 * 10.78833 * 4 3 2 27 27 H 1.09000 * 109.46840 * 130.78068 * 4 3 2 28 28 H 0.97004 * 119.99777 * 180.02562 * 8 7 5 29 29 H 1.07999 * 118.71057 * 0.37783 * 16 15 13 30 30 H 1.08996 * 109.36393 * 104.26894 * 17 16 15 31 31 H 1.09001 * 109.36491 * 223.88746 * 17 16 15 32 32 H 1.09004 * 109.63873 * 171.27737 * 19 18 17 33 33 H 1.08998 * 109.64108 * 50.66383 * 19 18 17 34 34 H 1.09000 * 109.45408 * 283.37696 * 20 15 13 35 35 H 1.09004 * 109.45195 * 43.31312 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3013 2.0580 -1.2681 5 6 3.7904 2.2274 -1.4257 6 1 4.4591 1.8673 -0.6579 7 6 4.2991 2.8430 -2.5496 8 7 3.4847 3.2820 -3.4844 9 14 6.1449 3.0537 -2.7447 10 1 6.7072 1.8694 -3.4424 11 1 6.4222 4.2756 -3.5416 12 1 6.7726 3.1833 -1.4052 13 6 2.2072 2.0292 1.1665 14 8 2.0468 1.4437 2.2203 15 6 2.6074 3.4447 1.1651 16 6 3.3679 3.8936 2.1474 17 6 3.8134 5.3260 2.2360 18 8 3.6260 5.9757 0.9753 19 6 2.3057 5.7995 0.4477 20 6 2.1362 4.3318 0.0454 21 1 -0.3634 0.4388 -0.9292 22 1 -0.3634 -1.0242 0.0846 23 1 -0.3634 0.5853 0.8446 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.9143 1.4602 -2.0934 27 1 1.8217 3.0369 -1.2725 28 1 3.8426 3.7148 -4.2753 29 1 3.6782 3.2050 2.9195 30 1 3.2311 5.8389 3.0014 31 1 4.8694 5.3602 2.5044 32 1 2.1725 6.4366 -0.4266 33 1 1.5695 6.0581 1.2087 34 1 2.7248 4.1303 -0.8496 35 1 1.0846 4.1306 -0.1590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330982555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:02 Heat of formation + Delta-G solvation = -71.655477 kcal Electronic energy + Delta-G solvation = -18101.635837 eV Core-core repulsion = 15292.900181 eV Total energy + Delta-G solvation = -2808.735656 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35445 -39.58234 -37.10678 -35.15832 -34.39951 -32.26577 -31.52354 -28.99437 -27.05723 -25.27924 -24.75124 -23.85310 -20.95131 -19.34506 -18.73103 -17.78097 -17.49154 -16.84021 -16.55594 -16.28713 -15.72424 -15.66380 -14.88884 -14.70213 -14.44782 -14.17577 -13.82802 -13.52431 -13.33551 -13.16890 -12.88381 -12.70787 -12.61672 -12.28776 -12.12893 -11.79365 -11.68426 -11.56561 -11.00672 -10.62664 -10.24708 -9.89874 -9.42870 -8.19713 -6.30750 0.56259 1.39079 1.42932 1.51139 2.07170 2.39875 2.47164 3.02285 3.11721 3.67917 3.90015 4.05169 4.14129 4.35894 4.38927 4.40181 4.49228 4.50858 4.58345 4.76914 4.78747 4.85331 4.94254 5.02519 5.21726 5.30541 5.32653 5.45782 5.62896 5.70739 5.88340 6.10517 6.21120 6.50156 6.81722 7.25971 7.40593 8.85419 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.013044 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.356950 B = 2146.111247 C = 3275.357025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.223 3.777 5 C -0.535 4.535 6 H 0.039 0.961 7 C 0.034 3.966 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.545 3.455 14 O -0.602 6.602 15 C -0.141 4.141 16 C -0.145 4.145 17 C 0.092 3.908 18 O -0.396 6.396 19 C 0.064 3.936 20 C -0.130 4.130 21 H 0.057 0.943 22 H 0.089 0.911 23 H 0.041 0.959 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.269 0.731 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 2.942 6.093 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.103 3.897 5 C -0.573 4.573 6 H 0.057 0.943 7 C -0.167 4.167 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.202 1.202 13 C 0.336 3.664 14 O -0.487 6.487 15 C -0.144 4.144 16 C -0.165 4.165 17 C 0.017 3.983 18 O -0.315 6.315 19 C -0.012 4.012 20 C -0.166 4.166 21 H 0.076 0.924 22 H 0.107 0.893 23 H 0.060 0.940 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.216 2.808 6.293 7.605 hybrid contribution 0.841 -0.524 -0.325 1.043 sum -2.375 2.284 5.969 6.818 Atomic orbital electron populations 1.22015 0.94336 1.03103 1.01446 1.21511 0.95532 0.82582 1.02317 1.48259 1.62523 1.14155 1.07395 1.20015 0.95530 0.94666 0.79507 1.21441 0.92527 1.38766 1.04595 0.94303 1.25398 1.01312 0.94811 0.95167 1.69964 1.35880 1.39590 1.09516 0.85773 0.81492 0.77813 0.77975 1.20278 1.20216 1.20247 1.18819 0.76446 0.87975 0.83137 1.90637 1.55999 1.69835 1.32188 1.20826 1.02226 0.93135 0.98224 1.23619 0.95963 0.99716 0.97198 1.21701 1.03311 0.87033 0.86300 1.88131 1.32516 1.73698 1.37115 1.22775 0.84087 0.94804 0.99542 1.21618 1.01835 0.94746 0.98445 0.92387 0.89258 0.94002 0.90170 0.91675 0.96024 0.91771 0.92222 0.86283 0.88589 0.86040 0.87508 0.91107 0.86929 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.23 71.98 0.74 -3.89 16 2 C 0.10 3.84 6.09 86.38 0.53 4.37 16 3 N -0.59 -26.04 2.56 -830.44 -2.12 -28.17 16 4 C 0.22 10.58 4.81 85.63 0.41 10.99 16 5 C -0.53 -27.95 7.10 25.60 0.18 -27.76 16 6 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 7 C 0.03 1.79 5.16 84.65 0.44 2.22 16 8 N -0.91 -48.57 13.29 21.45 0.28 -48.29 16 9 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.55 24.54 7.14 86.57 0.62 25.16 16 14 O -0.60 -28.88 16.07 -4.08 -0.07 -28.95 16 15 C -0.14 -5.75 4.97 -18.58 -0.09 -5.84 16 16 C -0.15 -5.15 9.53 24.59 0.23 -4.91 16 17 C 0.09 2.61 7.04 71.10 0.50 3.11 16 18 O -0.40 -13.39 10.85 -148.98 -1.62 -15.01 16 19 C 0.06 2.01 6.88 72.02 0.50 2.50 16 20 C -0.13 -4.99 3.99 29.80 0.12 -4.87 16 21 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 2.86 7.98 -2.39 -0.02 2.84 16 25 H 0.06 2.48 7.42 -2.38 -0.02 2.46 16 26 H 0.02 1.08 7.88 -2.39 -0.02 1.06 16 27 H 0.06 3.05 3.73 -2.39 -0.01 3.04 16 28 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.12 4.20 7.65 -2.91 -0.02 4.18 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 34 H 0.11 5.21 4.41 -2.39 -0.01 5.20 16 35 H 0.08 2.81 7.43 -2.38 -0.02 2.79 16 Total: -1.00 -61.79 286.13 3.75 -58.04 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.08 Total: 16.71 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 4.17 Total: 1.07 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.84 Total: -76.45 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.68 Total: -43.95 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.79 3.75 -58.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330982555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.616 kcal (2) G-P(sol) polarization free energy of solvation -61.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds