Wall clock time and date at job start Sun Mar 29 2020 21:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.45525 * 2 1 4 4 C 1.54504 * 110.62982 * 237.31385 * 2 1 3 5 5 C 1.54479 * 104.06143 * 241.29322 * 4 2 1 6 6 O 1.44424 * 104.80165 * 23.98270 * 5 4 2 7 7 C 1.44424 * 105.27468 * 319.48456 * 6 5 4 8 8 H 1.08998 * 110.37271 * 281.57259 * 7 6 5 9 9 C 1.50698 * 110.37281 * 159.34477 * 7 6 5 10 10 O 1.21295 * 120.00051 * 356.45638 * 9 7 6 11 11 N 1.34771 * 119.99950 * 176.45359 * 9 7 6 12 12 C 1.37098 * 119.99970 * 180.02562 * 11 9 7 13 13 H 1.08005 * 119.99953 * 223.68249 * 12 11 9 14 14 C 1.38950 * 120.00538 * 43.67727 * 12 11 9 15 15 N 1.31416 * 119.99367 * 18.46122 * 14 12 11 16 16 Si 1.86792 * 120.00453 * 198.46785 * 14 12 11 17 17 H 1.48503 * 109.47437 * 89.99842 * 16 14 12 18 18 H 1.48501 * 109.47306 * 209.99634 * 16 14 12 19 19 H 1.48497 * 109.46976 * 329.99899 * 16 14 12 20 20 C 1.46503 * 120.00323 * 0.02562 * 11 9 7 21 21 C 1.52996 * 117.49903 * 193.72010 * 20 11 9 22 22 C 1.52991 * 117.50233 * 125.09324 * 20 11 9 23 23 H 1.08994 * 109.47266 * 297.39520 * 1 2 3 24 24 H 1.09001 * 109.46992 * 57.40264 * 1 2 3 25 25 H 1.09006 * 109.46482 * 177.39598 * 1 2 3 26 26 H 1.09001 * 110.51169 * 122.64958 * 4 2 1 27 27 H 1.08998 * 110.51653 * 359.94247 * 4 2 1 28 28 H 1.08998 * 110.37492 * 265.14523 * 5 4 2 29 29 H 1.09007 * 110.36986 * 142.81216 * 5 4 2 30 30 H 0.97000 * 119.99600 * 174.85470 * 15 14 12 31 31 H 1.09005 * 115.54538 * 339.42208 * 20 11 9 32 32 H 1.09004 * 117.50146 * 359.97438 * 21 20 11 33 33 H 1.09004 * 117.49916 * 145.02028 * 21 20 11 34 34 H 1.08999 * 117.50304 * 214.98268 * 22 20 11 35 35 H 1.08999 * 117.50102 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0744 -0.7809 -1.2170 5 6 2.8803 -1.9398 -0.5894 6 8 2.3102 -2.1158 0.7258 7 6 2.0713 -0.7795 1.2189 8 1 3.0007 -0.3342 1.5739 9 6 1.0466 -0.8033 2.3236 10 8 0.5071 -1.8461 2.6280 11 7 0.7296 0.3341 2.9733 12 6 -0.2022 0.3124 3.9787 13 1 -0.9549 1.0850 4.0342 14 6 -0.1786 -0.7036 4.9262 15 7 0.9093 -1.4220 5.0921 16 14 -1.6929 -1.0485 5.9640 17 1 -2.5475 -2.0490 5.2756 18 1 -1.2761 -1.5800 7.2866 19 1 -2.4590 0.2092 6.1550 20 6 1.3808 1.5938 2.6053 21 6 1.2313 2.7738 3.5676 22 6 0.4795 2.7733 2.2351 23 1 -0.3633 0.4728 0.9124 24 1 -0.3633 0.5536 -0.8658 25 1 -0.3632 -1.0267 -0.0467 26 1 2.7244 -0.1456 -1.8187 27 1 1.2536 -1.1690 -1.8201 28 1 3.9341 -1.6718 -0.5135 29 1 2.7605 -2.8484 -1.1796 30 1 0.9518 -2.0806 5.8030 31 1 2.3262 1.4959 2.0716 32 1 0.6481 2.6131 4.4744 33 1 2.0784 3.4525 3.6672 34 1 0.8319 3.4516 1.4581 35 1 -0.5981 2.6122 2.2657 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333161685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:40 Heat of formation + Delta-G solvation = -36.339734 kcal Electronic energy + Delta-G solvation = -18491.100341 eV Core-core repulsion = 15683.896090 eV Total energy + Delta-G solvation = -2807.204251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75184 -37.76981 -35.84129 -33.01302 -32.71826 -30.90718 -29.38462 -26.59997 -24.70158 -22.53889 -21.63921 -21.35783 -20.16808 -19.16482 -16.64306 -16.17027 -15.95274 -15.01330 -14.76323 -14.40486 -13.93364 -13.77270 -13.31911 -13.07461 -12.58141 -12.32936 -11.99541 -11.57815 -11.13368 -11.07641 -10.91559 -10.79471 -10.66911 -10.55632 -10.46563 -10.33935 -10.15421 -9.97058 -9.70744 -9.26802 -8.65662 -7.88329 -6.96865 -6.07179 -3.83483 3.33080 3.39958 3.44007 3.98729 4.23227 4.43449 4.77077 4.85663 4.97386 5.09347 5.20579 5.35863 5.48584 5.55531 5.61397 5.77981 5.82160 5.82854 5.94847 5.98659 6.02784 6.19946 6.24045 6.24580 6.39167 6.45664 6.54462 6.74086 6.88783 6.97969 7.28008 7.65542 8.30895 9.08141 9.21991 9.67996 10.33514 11.01680 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.010454 C = 0.008496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.308325 B = 2677.724702 C = 3294.829607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.151 4.151 5 C 0.039 3.961 6 O -0.343 6.343 7 C 0.063 3.937 8 H 0.071 0.929 9 C 0.497 3.503 10 O -0.512 6.512 11 N -0.426 5.426 12 C -0.349 4.349 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.831 5.831 16 Si 0.912 3.088 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.074 3.926 21 C -0.178 4.178 22 C -0.204 4.204 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.265 0.735 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 6.257 -9.607 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.189 4.189 5 C -0.038 4.038 6 O -0.261 6.261 7 C 0.001 3.999 8 H 0.089 0.911 9 C 0.283 3.717 10 O -0.387 6.387 11 N -0.148 5.148 12 C -0.476 4.476 13 H 0.096 0.904 14 C -0.138 4.138 15 N -0.464 5.464 16 Si 0.740 3.260 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.032 4.032 21 C -0.216 4.216 22 C -0.243 4.243 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.994 5.242 -9.257 11.051 hybrid contribution -0.357 0.113 0.420 0.563 sum 2.637 5.355 -8.837 10.664 Atomic orbital electron populations 1.21931 0.93571 1.02486 1.02570 1.22411 0.97859 0.99097 0.93313 0.89965 1.23057 1.00234 0.97510 0.98090 1.23391 0.96464 0.98605 0.85347 1.89296 1.82401 1.24828 1.29528 1.23051 0.98303 0.83624 0.94923 0.91120 1.19216 0.84865 0.85086 0.82532 1.90553 1.53173 1.29911 1.65087 1.42685 1.37409 1.03312 1.31414 1.18820 1.08790 1.13784 1.06204 0.90366 1.25262 0.96384 0.96208 0.95990 1.69835 1.26151 1.21416 1.28981 0.86217 0.82586 0.78691 0.78556 1.20306 1.21320 1.19901 1.21723 0.95870 0.83599 1.02001 1.23100 1.02514 1.00793 0.95223 1.23265 0.99491 1.02977 0.98582 0.90141 0.93378 0.92363 0.90985 0.90691 0.92848 0.89526 0.92519 0.88092 0.87428 0.89994 0.89940 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.08 37.16 0.30 -2.33 16 2 C -0.11 -1.77 2.71 -89.05 -0.24 -2.01 16 3 H 0.08 1.17 7.32 -51.93 -0.38 0.79 16 4 C -0.15 -2.05 6.74 -25.17 -0.17 -2.22 16 5 C 0.04 0.60 7.63 37.93 0.29 0.89 16 6 O -0.34 -7.48 10.91 -54.42 -0.59 -8.08 16 7 C 0.06 1.31 2.69 -27.11 -0.07 1.24 16 8 H 0.07 1.40 7.32 -51.93 -0.38 1.02 16 9 C 0.50 13.00 4.60 -10.99 -0.05 12.95 16 10 O -0.51 -15.96 14.27 -13.64 -0.19 -16.16 16 11 N -0.43 -10.58 2.05 -107.73 -0.22 -10.80 16 12 C -0.35 -9.50 7.63 -14.93 -0.11 -9.62 16 13 H 0.08 2.05 7.52 -52.48 -0.39 1.66 16 14 C 0.07 2.07 4.38 -17.47 -0.08 1.99 16 15 N -0.83 -25.25 11.70 55.50 0.65 -24.60 16 16 Si 0.91 22.24 29.59 -169.99 -5.03 17.21 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.07 1.46 4.68 -67.94 -0.32 1.15 16 21 C -0.18 -3.19 9.85 -26.73 -0.26 -3.46 16 22 C -0.20 -3.40 9.72 -26.74 -0.26 -3.66 16 23 H 0.08 1.62 5.43 -51.93 -0.28 1.34 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.98 7.74 -51.93 -0.40 0.58 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.26 7.72 8.32 -40.82 -0.34 7.38 16 31 H 0.10 1.78 5.89 -51.93 -0.31 1.47 16 32 H 0.11 2.17 7.06 -51.93 -0.37 1.80 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.65 8.01 -51.93 -0.42 1.24 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -33.91 280.13 -7.17 -41.07 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.02 Total: 2.20 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.98 Total: -5.07 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.43 Total: -35.39 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.79 Total: -24.23 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.91 -7.17 -41.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333161685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.735 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds