Wall clock time and date at job start Sun Mar 29 2020 21:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.45525 * 2 1 4 4 C 1.54504 * 110.62982 * 237.31385 * 2 1 3 5 5 C 1.54479 * 104.06143 * 241.29322 * 4 2 1 6 6 O 1.44424 * 104.80165 * 23.98270 * 5 4 2 7 7 C 1.44424 * 105.27468 * 319.48456 * 6 5 4 8 8 H 1.08998 * 110.37271 * 281.57259 * 7 6 5 9 9 C 1.50698 * 110.37281 * 159.34477 * 7 6 5 10 10 O 1.21295 * 120.00051 * 356.45638 * 9 7 6 11 11 N 1.34771 * 119.99950 * 176.45359 * 9 7 6 12 12 C 1.37098 * 119.99970 * 180.02562 * 11 9 7 13 13 H 1.08005 * 119.99953 * 223.68249 * 12 11 9 14 14 C 1.38950 * 120.00538 * 43.67727 * 12 11 9 15 15 N 1.31416 * 119.99367 * 18.46122 * 14 12 11 16 16 Si 1.86792 * 120.00453 * 198.46785 * 14 12 11 17 17 H 1.48503 * 109.47437 * 89.99842 * 16 14 12 18 18 H 1.48501 * 109.47306 * 209.99634 * 16 14 12 19 19 H 1.48497 * 109.46976 * 329.99899 * 16 14 12 20 20 C 1.46503 * 120.00323 * 0.02562 * 11 9 7 21 21 C 1.52996 * 117.49903 * 193.72010 * 20 11 9 22 22 C 1.52991 * 117.50233 * 125.09324 * 20 11 9 23 23 H 1.08994 * 109.47266 * 297.39520 * 1 2 3 24 24 H 1.09001 * 109.46992 * 57.40264 * 1 2 3 25 25 H 1.09006 * 109.46482 * 177.39598 * 1 2 3 26 26 H 1.09001 * 110.51169 * 122.64958 * 4 2 1 27 27 H 1.08998 * 110.51653 * 359.94247 * 4 2 1 28 28 H 1.08998 * 110.37492 * 265.14523 * 5 4 2 29 29 H 1.09007 * 110.36986 * 142.81216 * 5 4 2 30 30 H 0.97000 * 119.99600 * 174.85470 * 15 14 12 31 31 H 1.09005 * 115.54538 * 339.42208 * 20 11 9 32 32 H 1.09004 * 117.50146 * 359.97438 * 21 20 11 33 33 H 1.09004 * 117.49916 * 145.02028 * 21 20 11 34 34 H 1.08999 * 117.50304 * 214.98268 * 22 20 11 35 35 H 1.08999 * 117.50102 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0744 -0.7809 -1.2170 5 6 2.8803 -1.9398 -0.5894 6 8 2.3102 -2.1158 0.7258 7 6 2.0713 -0.7795 1.2189 8 1 3.0007 -0.3342 1.5739 9 6 1.0466 -0.8033 2.3236 10 8 0.5071 -1.8461 2.6280 11 7 0.7296 0.3341 2.9733 12 6 -0.2022 0.3124 3.9787 13 1 -0.9549 1.0850 4.0342 14 6 -0.1786 -0.7036 4.9262 15 7 0.9093 -1.4220 5.0921 16 14 -1.6929 -1.0485 5.9640 17 1 -2.5475 -2.0490 5.2756 18 1 -1.2761 -1.5800 7.2866 19 1 -2.4590 0.2092 6.1550 20 6 1.3808 1.5938 2.6053 21 6 1.2313 2.7738 3.5676 22 6 0.4795 2.7733 2.2351 23 1 -0.3633 0.4728 0.9124 24 1 -0.3633 0.5536 -0.8658 25 1 -0.3632 -1.0267 -0.0467 26 1 2.7244 -0.1456 -1.8187 27 1 1.2536 -1.1690 -1.8201 28 1 3.9341 -1.6718 -0.5135 29 1 2.7605 -2.8484 -1.1796 30 1 0.9518 -2.0806 5.8030 31 1 2.3262 1.4959 2.0716 32 1 0.6481 2.6131 4.4744 33 1 2.0784 3.4525 3.6672 34 1 0.8319 3.4516 1.4581 35 1 -0.5981 2.6122 2.2657 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333161685.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:39 Heat of formation + Delta-G solvation = -59.005376 kcal Electronic energy + Delta-G solvation = -18492.083197 eV Core-core repulsion = 15683.896090 eV Total energy + Delta-G solvation = -2808.187107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.33502 -39.38570 -37.60876 -34.73034 -34.43664 -32.78665 -30.77744 -28.22336 -26.56617 -23.97698 -23.00753 -22.89359 -21.62301 -20.94012 -18.37251 -17.88250 -17.45548 -16.76816 -16.49583 -15.89205 -15.63731 -15.34477 -14.92808 -14.52338 -14.16208 -13.90622 -13.56424 -13.28471 -12.94001 -12.79706 -12.74335 -12.25056 -12.17346 -12.08640 -12.05248 -11.77835 -11.65690 -11.56797 -11.14197 -10.73881 -10.67056 -9.85593 -8.93211 -8.20251 -5.98168 1.33306 1.42672 1.47209 2.18486 2.40292 2.75526 3.13975 3.34407 3.42068 3.61813 3.85578 3.88811 4.17064 4.22328 4.31997 4.33708 4.45601 4.49107 4.53395 4.77615 4.80942 4.86366 4.95077 5.04687 5.06946 5.12347 5.24336 5.32136 5.45537 5.48745 5.54597 5.92966 6.21941 7.02892 7.24955 7.68691 8.37857 8.88535 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.010454 C = 0.008496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.308325 B = 2677.724702 C = 3294.829607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.117 0.883 4 C -0.139 4.139 5 C 0.028 3.972 6 O -0.393 6.393 7 C 0.064 3.936 8 H 0.082 0.918 9 C 0.482 3.518 10 O -0.582 6.582 11 N -0.436 5.436 12 C -0.351 4.351 13 H 0.082 0.918 14 C 0.017 3.983 15 N -0.875 5.875 16 Si 0.968 3.032 17 H -0.294 1.294 18 H -0.282 1.282 19 H -0.249 1.249 20 C 0.044 3.956 21 C -0.178 4.178 22 C -0.171 4.171 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.023 0.977 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.258 0.742 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 8.985 -11.863 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.135 0.865 4 C -0.176 4.176 5 C -0.048 4.048 6 O -0.312 6.312 7 C 0.003 3.997 8 H 0.099 0.901 9 C 0.270 3.730 10 O -0.463 6.463 11 N -0.157 5.157 12 C -0.478 4.478 13 H 0.100 0.900 14 C -0.189 4.189 15 N -0.510 5.510 16 Si 0.794 3.206 17 H -0.221 1.221 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.061 4.061 21 C -0.216 4.216 22 C -0.209 4.209 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.042 0.958 26 H 0.133 0.867 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.809 8.051 -11.523 14.564 hybrid contribution -0.608 -0.680 1.046 1.388 sum 3.201 7.371 -10.478 13.204 Atomic orbital electron populations 1.21862 0.94975 1.00511 1.02703 1.22459 0.96556 1.00551 0.92273 0.86546 1.23050 1.00720 0.96878 0.96982 1.23763 0.97748 1.00378 0.82882 1.89254 1.83306 1.25797 1.32839 1.23004 0.97088 0.84525 0.95058 0.90062 1.20192 0.85236 0.84376 0.83161 1.90492 1.55993 1.32396 1.67406 1.42852 1.37225 1.05157 1.30456 1.19093 1.09518 1.13233 1.05979 0.90040 1.26108 0.98685 0.96343 0.97769 1.69959 1.28276 1.22672 1.30107 0.85337 0.79384 0.78907 0.77009 1.22107 1.20740 1.17242 1.22046 0.97712 0.81951 1.04392 1.23154 1.03619 1.00282 0.94565 1.23280 0.98094 1.00816 0.98749 0.93054 0.89635 0.95801 0.86677 0.90309 0.90524 0.88208 0.93297 0.85573 0.90447 0.86514 0.85396 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.08 71.98 0.58 -4.28 16 2 C -0.10 -2.96 2.71 -9.78 -0.03 -2.98 16 3 H 0.12 2.68 7.32 -2.39 -0.02 2.66 16 4 C -0.14 -3.19 6.74 31.61 0.21 -2.97 16 5 C 0.03 0.80 7.63 72.49 0.55 1.35 16 6 O -0.39 -17.25 10.91 -130.63 -1.43 -18.68 16 7 C 0.06 2.66 2.69 30.35 0.08 2.74 16 8 H 0.08 3.11 7.32 -2.39 -0.02 3.09 16 9 C 0.48 25.92 4.60 87.66 0.40 26.33 16 10 O -0.58 -38.37 14.27 15.27 0.22 -38.15 16 11 N -0.44 -21.90 2.05 -613.14 -1.26 -23.16 16 12 C -0.35 -19.56 7.63 84.04 0.64 -18.92 16 13 H 0.08 4.35 7.52 -2.91 -0.02 4.33 16 14 C 0.02 0.99 4.38 84.93 0.37 1.36 16 15 N -0.87 -55.76 11.70 21.66 0.25 -55.50 16 16 Si 0.97 47.25 29.59 68.60 2.03 49.28 16 17 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 20 C 0.04 1.63 4.68 44.99 0.21 1.84 16 21 C -0.18 -5.95 9.85 30.59 0.30 -5.65 16 22 C -0.17 -5.08 9.72 30.59 0.30 -4.78 16 23 H 0.05 2.03 5.43 -2.39 -0.01 2.02 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.77 7.74 -2.39 -0.02 1.75 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.26 15.90 8.32 -92.71 -0.77 15.13 16 31 H 0.13 4.01 5.89 -2.38 -0.01 3.99 16 32 H 0.08 3.07 7.06 -2.39 -0.02 3.06 16 33 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 Total: -1.00 -80.65 280.13 4.52 -76.13 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.08 Total: 16.06 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 3.63 Total: -5.97 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -1.00 Total: -78.66 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -1.21 Total: -56.83 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -80.65 4.52 -76.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333161685.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.125 kcal (2) G-P(sol) polarization free energy of solvation -80.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds