Wall clock time and date at job start Sun Mar 29 2020 22:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99872 * 2 1 4 4 H 1.08999 * 112.88427 * 21.83506 * 3 2 1 5 5 C 1.53956 * 113.66222 * 250.49369 * 3 2 1 6 6 C 1.53942 * 87.29264 * 220.79396 * 5 3 2 7 7 H 1.09002 * 113.66135 * 270.16471 * 6 5 3 8 8 N 1.46503 * 113.66082 * 139.21035 * 6 5 3 9 9 C 1.34777 * 120.00527 * 104.50377 * 8 6 5 10 10 O 1.21686 * 119.99487 * 359.97438 * 9 8 6 11 11 C 1.46373 * 120.00175 * 179.97438 * 9 8 6 12 12 H 1.08002 * 119.99728 * 6.24194 * 11 9 8 13 13 C 1.40042 * 119.99893 * 186.24280 * 11 9 8 14 14 N 1.30671 * 119.99961 * 184.67122 * 13 11 9 15 15 Si 1.86802 * 120.00099 * 4.67753 * 13 11 9 16 16 H 1.48505 * 109.47216 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.46975 * 299.99476 * 15 13 11 18 18 H 1.48499 * 109.47526 * 59.99639 * 15 13 11 19 19 C 1.52902 * 113.66104 * 153.30769 * 3 2 1 20 20 C 1.52906 * 121.13632 * 265.09408 * 19 3 2 21 21 C 1.53946 * 86.78543 * 100.81612 * 20 19 3 22 22 C 1.52910 * 121.13583 * 13.65065 * 19 3 2 23 23 H 1.08998 * 109.47081 * 60.00416 * 1 2 3 24 24 H 1.09006 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47456 * 300.00405 * 1 2 3 26 26 H 1.08998 * 113.58017 * 106.19034 * 5 3 2 27 27 H 1.08999 * 113.57372 * 335.39878 * 5 3 2 28 28 H 0.97004 * 119.99397 * 284.49942 * 8 6 5 29 29 H 0.96998 * 120.00543 * 354.90308 * 14 13 11 30 30 H 1.09000 * 113.66449 * 215.28701 * 20 19 3 31 31 H 1.09002 * 113.66467 * 346.34024 * 20 19 3 32 32 H 1.09001 * 113.58282 * 270.13940 * 21 20 19 33 33 H 1.09002 * 113.58560 * 139.34081 * 21 20 19 34 34 H 1.08998 * 113.66250 * 13.66045 * 22 19 3 35 35 H 1.09003 * 113.65943 * 144.71248 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3310 2.0718 0.3735 5 6 2.6917 1.6784 -1.3292 6 6 3.8157 2.3132 -0.4905 7 1 3.6461 3.3640 -0.2554 8 7 5.1586 2.0570 -1.0173 9 6 5.8267 3.0330 -1.6635 10 8 5.3142 4.1269 -1.8099 11 6 7.1685 2.7770 -2.1892 12 1 7.5831 1.7806 -2.1493 13 6 7.9147 3.8243 -2.7439 14 7 9.0739 3.5799 -3.2954 15 14 7.2531 5.5705 -2.6952 16 1 8.2258 6.4867 -3.3432 17 1 5.9583 5.6296 -3.4200 18 1 7.0494 5.9837 -1.2835 19 6 3.4028 1.3571 0.6291 20 6 3.5929 1.7321 2.0992 21 6 3.7468 0.2252 2.3739 22 6 4.1925 0.0777 0.9077 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.1282 2.4001 -1.9206 27 1 3.0156 0.8150 -1.9103 28 1 5.5669 1.1848 -0.9008 29 1 9.4515 2.6874 -3.2556 30 1 4.4993 2.3064 2.2906 31 1 2.7066 2.1719 2.5567 32 1 2.8047 -0.2762 2.5956 33 1 4.5311 -0.0091 3.0938 34 1 3.7854 -0.8041 0.4132 35 1 5.2675 0.1872 0.7642 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334609551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:54 Heat of formation + Delta-G solvation = -58.644313 kcal Electronic energy + Delta-G solvation = -17586.373300 eV Core-core repulsion = 14778.201850 eV Total energy + Delta-G solvation = -2808.171450 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68255 -37.56854 -36.87361 -34.44222 -32.84174 -31.69734 -27.07892 -26.23802 -25.61828 -24.46672 -23.31891 -20.82995 -19.77446 -18.30913 -17.79357 -16.73958 -15.91963 -15.68521 -15.16326 -14.71193 -14.36621 -13.91446 -13.53903 -13.37320 -12.64808 -12.58506 -12.26556 -12.13859 -11.96020 -11.75570 -11.58441 -11.20725 -10.96866 -10.50689 -10.26048 -10.23189 -10.02442 -9.93940 -9.26438 -9.18283 -8.95008 -7.91179 -7.85016 -6.96489 -4.90461 3.60000 3.66945 3.72650 4.10333 4.33491 4.44184 4.55687 4.65765 4.73721 4.84857 4.92218 4.94806 5.14409 5.22988 5.30406 5.40220 5.53140 5.54270 5.62343 5.79377 5.85111 5.93936 5.99891 6.04781 6.18368 6.24395 6.47649 6.53299 6.62746 7.24874 7.53554 7.73630 7.79376 8.13826 8.86338 9.11203 10.09328 10.35701 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.006404 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.576202 B = 4370.922485 C = 4603.814915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.087 3.913 4 H 0.088 0.912 5 C -0.168 4.168 6 C 0.152 3.848 7 H 0.107 0.893 8 N -0.738 5.738 9 C 0.552 3.448 10 O -0.619 6.619 11 C -0.599 4.599 12 H 0.069 0.931 13 C 0.060 3.940 14 N -0.834 5.834 15 Si 1.131 2.869 16 H -0.323 1.323 17 H -0.281 1.281 18 H -0.292 1.292 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.109 4.109 23 H 0.040 0.960 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.388 0.612 29 H 0.277 0.723 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 -7.231 9.277 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C 0.029 3.971 4 H 0.105 0.895 5 C -0.208 4.208 6 C 0.044 3.956 7 H 0.125 0.875 8 N -0.388 5.388 9 C 0.361 3.639 10 O -0.513 6.513 11 C -0.635 4.635 12 H 0.087 0.913 13 C -0.157 4.157 14 N -0.462 5.462 15 Si 0.965 3.035 16 H -0.255 1.255 17 H -0.208 1.208 18 H -0.219 1.219 19 C -0.112 4.112 20 C -0.163 4.163 21 C -0.172 4.172 22 C -0.146 4.146 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.222 0.778 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.524 -5.222 8.687 16.901 hybrid contribution -0.366 -2.114 0.535 2.211 sum -13.890 -7.337 9.222 18.216 Atomic orbital electron populations 1.22745 0.81773 1.02337 0.99770 1.87926 1.18995 1.27498 1.94610 1.23250 0.92266 0.84713 0.96851 0.89463 1.23999 0.98565 1.01349 0.96874 1.21554 0.83709 0.98450 0.91865 0.87497 1.45632 1.15972 1.15884 1.61348 1.18471 0.86256 0.82446 0.76740 1.90130 1.70432 1.25016 1.65678 1.22051 0.99773 0.98485 1.43190 0.91261 1.27155 0.93087 1.07166 0.88291 1.70651 1.16901 1.25751 1.32898 0.82359 0.73123 0.70842 0.77227 1.25516 1.20829 1.21936 1.23213 0.95141 0.98043 0.94785 1.22761 1.01997 0.96653 0.94927 1.22769 1.01171 0.96468 0.96748 1.22398 0.99513 0.96556 0.96155 0.94149 0.90009 0.94316 0.91291 0.89323 0.77846 0.91242 0.89531 0.91794 0.90388 0.91836 0.90685 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.86 101.05 1.10 1.39 16 2 O -0.37 -4.92 9.90 -35.23 -0.35 -5.27 16 3 C 0.09 1.19 4.17 -26.28 -0.11 1.08 16 4 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 5 C -0.17 -2.72 7.72 -25.75 -0.20 -2.92 16 6 C 0.15 2.76 4.08 -67.48 -0.28 2.48 16 7 H 0.11 2.12 7.54 -51.93 -0.39 1.73 16 8 N -0.74 -15.85 5.29 -54.78 -0.29 -16.14 16 9 C 0.55 14.82 7.57 -12.99 -0.10 14.72 16 10 O -0.62 -17.91 11.71 5.20 0.06 -17.85 16 11 C -0.60 -17.12 9.96 -35.64 -0.36 -17.47 16 12 H 0.07 1.95 8.05 -52.49 -0.42 1.53 16 13 C 0.06 1.76 5.52 -17.37 -0.10 1.67 16 14 N -0.83 -24.41 13.64 55.55 0.76 -23.65 16 15 Si 1.13 30.31 25.99 -169.99 -4.42 25.89 16 16 H -0.32 -8.33 7.11 56.52 0.40 -7.93 16 17 H -0.28 -7.76 6.78 56.52 0.38 -7.38 16 18 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 19 C -0.11 -1.61 1.07 -154.72 -0.17 -1.77 16 20 C -0.13 -1.64 7.84 -26.29 -0.21 -1.85 16 21 C -0.13 -1.61 8.08 -25.75 -0.21 -1.82 16 22 C -0.11 -1.49 6.87 -26.28 -0.18 -1.68 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.39 7.63 6.90 -40.82 -0.28 7.34 16 29 H 0.28 7.78 8.72 -40.82 -0.36 7.42 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.04 7.65 -51.93 -0.40 0.64 16 35 H 0.08 1.21 6.96 -51.93 -0.36 0.84 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -31.77 288.28 -5.93 -37.70 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.24 Total: 1.14 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.80 Total: -6.17 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.47 Total: -39.79 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.29 Total: -23.12 kcal Atomic # 14 Polarization: 30.31 SS G_CDS: -4.42 Total: 25.89 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.77 -5.93 -37.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334609551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.942 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds