Wall clock time and date at job start Sun Mar 29 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00123 * 2 1 4 4 H 1.09002 * 112.95063 * 338.10211 * 3 2 1 5 5 C 1.53952 * 113.66214 * 109.50312 * 3 2 1 6 6 C 1.53950 * 87.37851 * 139.16649 * 5 3 2 7 7 H 1.09001 * 113.66131 * 220.82834 * 6 5 3 8 8 N 1.46503 * 113.65952 * 89.78430 * 6 5 3 9 9 C 1.34779 * 120.00222 * 104.50431 * 8 6 5 10 10 O 1.21682 * 119.99838 * 359.97438 * 9 8 6 11 11 C 1.46383 * 119.99787 * 179.97438 * 9 8 6 12 12 H 1.08000 * 119.99917 * 359.97438 * 11 9 8 13 13 C 1.40043 * 119.99790 * 179.97438 * 11 9 8 14 14 N 1.30672 * 119.99787 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99981 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46948 * 89.99997 * 15 13 11 17 17 H 1.48501 * 109.47308 * 209.99736 * 15 13 11 18 18 H 1.48501 * 109.47162 * 330.00113 * 15 13 11 19 19 C 1.52909 * 113.66769 * 206.69244 * 3 2 1 20 20 C 1.52907 * 121.13536 * 94.90869 * 19 3 2 21 21 C 1.53958 * 86.78205 * 209.38733 * 20 19 3 22 22 C 1.52915 * 121.13447 * 346.35022 * 19 3 2 23 23 H 1.08996 * 109.46892 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47222 * 299.99660 * 1 2 3 25 25 H 1.09008 * 109.47267 * 59.99837 * 1 2 3 26 26 H 1.09002 * 113.58142 * 253.81200 * 5 3 2 27 27 H 1.09004 * 113.57653 * 24.52801 * 5 3 2 28 28 H 0.97001 * 119.99854 * 284.49654 * 8 6 5 29 29 H 0.97004 * 119.99650 * 179.97438 * 14 13 11 30 30 H 1.08994 * 113.66316 * 323.85618 * 20 19 3 31 31 H 1.08997 * 113.66044 * 94.91866 * 20 19 3 32 32 H 1.09000 * 113.57861 * 270.13288 * 21 20 19 33 33 H 1.08990 * 113.65166 * 139.34938 * 21 20 19 34 34 H 1.09004 * 113.66330 * 265.09006 * 22 19 3 35 35 H 1.08998 * 113.65817 * 36.05116 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3323 2.0726 -0.3743 5 6 2.6916 1.6784 1.3292 6 6 3.8174 2.3128 0.4925 7 1 4.8159 2.1208 0.8854 8 7 3.5902 3.7251 0.1757 9 6 4.2753 4.6818 0.8328 10 8 5.0823 4.3727 1.6894 11 6 4.0486 6.0928 0.5158 12 1 3.3326 6.3671 -0.2448 13 6 4.7601 7.0870 1.1989 14 7 5.6267 6.7550 2.1188 15 14 4.4713 8.8875 0.7940 16 1 3.3858 9.4208 1.6559 17 1 5.7187 9.6558 1.0368 18 1 4.0796 9.0175 -0.6325 19 6 3.4029 1.3573 -0.6291 20 6 3.5930 1.7324 -2.0992 21 6 4.8466 0.8391 -2.0752 22 6 4.1927 0.0779 -0.9078 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 2.1281 2.4001 1.9206 27 1 3.0144 0.8150 1.9110 28 1 2.9467 3.9715 -0.5070 29 1 6.1198 7.4436 2.5917 30 1 2.8030 1.3600 -2.7513 31 1 3.8114 2.7886 -2.2565 32 1 5.7556 1.3709 -1.7941 33 1 4.9708 0.2355 -2.9742 34 1 4.8901 -0.1876 -0.1132 35 1 3.5710 -0.7599 -1.2235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334609552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:56 Heat of formation + Delta-G solvation = -43.232060 kcal Electronic energy + Delta-G solvation = -17536.700584 eV Core-core repulsion = 14729.197460 eV Total energy + Delta-G solvation = -2807.503124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50255 -37.06980 -36.72140 -34.21227 -32.47931 -31.05184 -26.95808 -26.16565 -25.55889 -24.26243 -23.46114 -20.84675 -19.61294 -18.02035 -16.95855 -16.40159 -15.86652 -15.40836 -15.18955 -14.83703 -14.26440 -13.93869 -13.06481 -12.91920 -12.58631 -12.29089 -12.14102 -12.01768 -11.66733 -11.42237 -11.20673 -11.04642 -10.90059 -10.86399 -10.48000 -10.27115 -10.03773 -9.98323 -9.66214 -9.02427 -8.86368 -7.63609 -7.52052 -6.19889 -4.65807 3.13216 3.20140 3.23415 3.90397 4.08796 4.53394 4.57555 4.70878 4.89415 5.06040 5.07382 5.17454 5.28779 5.39793 5.45477 5.57577 5.64483 5.71683 5.88335 5.95218 6.00886 6.12047 6.17082 6.27147 6.32931 6.44795 6.57433 6.71553 6.77385 7.39641 7.42194 7.90773 8.10138 8.32088 9.01153 9.51869 10.58914 10.77349 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032706 B = 0.006149 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.895780 B = 4552.323566 C = 4793.663984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.170 4.170 6 C 0.169 3.831 7 H 0.095 0.905 8 N -0.746 5.746 9 C 0.556 3.444 10 O -0.578 6.578 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.767 5.767 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.102 4.102 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.380 0.620 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 -9.816 -6.933 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.018 3.982 4 H 0.102 0.898 5 C -0.210 4.210 6 C 0.061 3.939 7 H 0.113 0.887 8 N -0.399 5.399 9 C 0.361 3.639 10 O -0.460 6.460 11 C -0.582 4.582 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.112 4.112 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.139 4.139 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.211 0.789 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.649 -10.123 -6.146 13.581 hybrid contribution -0.839 1.236 -0.471 1.566 sum -7.489 -8.887 -6.617 13.373 Atomic orbital electron populations 1.22717 0.82038 1.02067 0.99764 1.87900 1.18828 1.28090 1.94646 1.23626 0.93145 0.84174 0.97263 0.89826 1.23990 0.99308 1.00772 0.96888 1.20890 0.98407 0.82557 0.92056 0.88726 1.45873 1.46876 1.03104 1.44047 1.18237 0.79769 0.85287 0.80648 1.90601 1.37747 1.82801 1.34884 1.20866 1.25232 0.89291 1.22819 0.91468 1.25697 0.93499 1.00442 0.93557 1.70022 1.18058 1.34038 1.17466 0.86380 0.78299 0.82542 0.79572 1.19767 1.20440 1.18926 1.23318 0.94634 0.98085 0.95171 1.22680 0.97862 1.00665 0.95303 1.22809 0.97876 0.98559 0.98359 1.22419 0.97970 0.95478 0.98066 0.90212 0.94233 0.94412 0.91124 0.89627 0.78870 0.92090 0.90529 0.90663 0.90077 0.91938 0.91508 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.86 101.05 1.10 1.44 16 2 O -0.38 -5.40 10.02 -35.23 -0.35 -5.76 16 3 C 0.08 1.15 4.10 -26.28 -0.11 1.04 16 4 H 0.08 1.22 7.90 -51.93 -0.41 0.81 16 5 C -0.17 -2.98 7.71 -25.75 -0.20 -3.18 16 6 C 0.17 3.30 4.09 -67.40 -0.28 3.03 16 7 H 0.09 2.11 7.54 -51.93 -0.39 1.72 16 8 N -0.75 -16.48 4.87 -54.70 -0.27 -16.75 16 9 C 0.56 15.68 7.75 -12.98 -0.10 15.58 16 10 O -0.58 -18.64 14.66 5.21 0.08 -18.57 16 11 C -0.55 -15.27 9.54 -35.63 -0.34 -15.61 16 12 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 13 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 14 N -0.77 -22.98 11.83 55.55 0.66 -22.32 16 15 Si 0.91 20.05 29.56 -169.99 -5.02 15.02 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.11 -1.73 0.92 -154.63 -0.14 -1.87 16 20 C -0.13 -1.82 7.60 -26.28 -0.20 -2.02 16 21 C -0.14 -1.88 8.08 -25.75 -0.21 -2.09 16 22 C -0.10 -1.43 7.47 -26.28 -0.20 -1.63 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.38 7.45 8.25 -40.82 -0.34 7.12 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.16 7.51 -51.93 -0.39 0.77 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.15 7.84 -51.93 -0.41 0.75 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -33.03 294.34 -6.53 -39.56 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.29 Total: 7.34 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.77 Total: -2.97 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.39 Total: -39.07 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.28 Total: -24.32 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.03 -6.53 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334609552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.673 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds