Wall clock time and date at job start Sun Mar 29 2020 22:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00123 * 2 1 4 4 H 1.09002 * 112.95063 * 338.10211 * 3 2 1 5 5 C 1.53952 * 113.66214 * 109.50312 * 3 2 1 6 6 C 1.53950 * 87.37851 * 139.16649 * 5 3 2 7 7 H 1.09001 * 113.66131 * 220.82834 * 6 5 3 8 8 N 1.46503 * 113.65952 * 89.78430 * 6 5 3 9 9 C 1.34779 * 120.00222 * 104.50431 * 8 6 5 10 10 O 1.21682 * 119.99838 * 359.97438 * 9 8 6 11 11 C 1.46383 * 119.99787 * 179.97438 * 9 8 6 12 12 H 1.08000 * 119.99917 * 359.97438 * 11 9 8 13 13 C 1.40043 * 119.99790 * 179.97438 * 11 9 8 14 14 N 1.30672 * 119.99787 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99981 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46948 * 89.99997 * 15 13 11 17 17 H 1.48501 * 109.47308 * 209.99736 * 15 13 11 18 18 H 1.48501 * 109.47162 * 330.00113 * 15 13 11 19 19 C 1.52909 * 113.66769 * 206.69244 * 3 2 1 20 20 C 1.52907 * 121.13536 * 94.90869 * 19 3 2 21 21 C 1.53958 * 86.78205 * 209.38733 * 20 19 3 22 22 C 1.52915 * 121.13447 * 346.35022 * 19 3 2 23 23 H 1.08996 * 109.46892 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47222 * 299.99660 * 1 2 3 25 25 H 1.09008 * 109.47267 * 59.99837 * 1 2 3 26 26 H 1.09002 * 113.58142 * 253.81200 * 5 3 2 27 27 H 1.09004 * 113.57653 * 24.52801 * 5 3 2 28 28 H 0.97001 * 119.99854 * 284.49654 * 8 6 5 29 29 H 0.97004 * 119.99650 * 179.97438 * 14 13 11 30 30 H 1.08994 * 113.66316 * 323.85618 * 20 19 3 31 31 H 1.08997 * 113.66044 * 94.91866 * 20 19 3 32 32 H 1.09000 * 113.57861 * 270.13288 * 21 20 19 33 33 H 1.08990 * 113.65166 * 139.34938 * 21 20 19 34 34 H 1.09004 * 113.66330 * 265.09006 * 22 19 3 35 35 H 1.08998 * 113.65817 * 36.05116 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3323 2.0726 -0.3743 5 6 2.6916 1.6784 1.3292 6 6 3.8174 2.3128 0.4925 7 1 4.8159 2.1208 0.8854 8 7 3.5902 3.7251 0.1757 9 6 4.2753 4.6818 0.8328 10 8 5.0823 4.3727 1.6894 11 6 4.0486 6.0928 0.5158 12 1 3.3326 6.3671 -0.2448 13 6 4.7601 7.0870 1.1989 14 7 5.6267 6.7550 2.1188 15 14 4.4713 8.8875 0.7940 16 1 3.3858 9.4208 1.6559 17 1 5.7187 9.6558 1.0368 18 1 4.0796 9.0175 -0.6325 19 6 3.4029 1.3573 -0.6291 20 6 3.5930 1.7324 -2.0992 21 6 4.8466 0.8391 -2.0752 22 6 4.1927 0.0779 -0.9078 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 2.1281 2.4001 1.9206 27 1 3.0144 0.8150 1.9110 28 1 2.9467 3.9715 -0.5070 29 1 6.1198 7.4436 2.5917 30 1 2.8030 1.3600 -2.7513 31 1 3.8114 2.7886 -2.2565 32 1 5.7556 1.3709 -1.7941 33 1 4.9708 0.2355 -2.9742 34 1 4.8901 -0.1876 -0.1132 35 1 3.5710 -0.7599 -1.2235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334609552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:55 Heat of formation + Delta-G solvation = -66.650254 kcal Electronic energy + Delta-G solvation = -17537.716073 eV Core-core repulsion = 14729.197460 eV Total energy + Delta-G solvation = -2808.518614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.85097 -38.98565 -37.94130 -35.75531 -34.59178 -32.89156 -28.61610 -27.58183 -26.73058 -25.51847 -24.94521 -22.38893 -21.34069 -19.71939 -18.62496 -17.77132 -17.30660 -16.99336 -16.63174 -16.10045 -15.81184 -15.47562 -14.78960 -14.57281 -13.98732 -13.77408 -13.59111 -13.25571 -13.09417 -12.93276 -12.81700 -12.68886 -12.61509 -12.10893 -12.07075 -12.00619 -11.27122 -11.24507 -10.97816 -10.92655 -10.21810 -9.87993 -9.44979 -8.29794 -6.86653 1.40095 1.41620 1.57009 2.23677 2.45909 2.76306 3.00929 3.42459 3.50597 3.64147 3.81446 3.87624 3.96424 4.02955 4.31258 4.53264 4.56236 4.59358 4.64318 4.79817 4.87159 4.90907 4.94175 4.98394 5.03968 5.08018 5.17573 5.31404 5.49623 5.55901 5.87242 6.20735 6.27039 6.35378 6.86129 7.54160 8.49090 8.67047 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032706 B = 0.006149 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.895780 B = 4552.323566 C = 4793.663984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.096 3.904 4 H 0.095 0.905 5 C -0.170 4.170 6 C 0.151 3.849 7 H 0.056 0.944 8 N -0.730 5.730 9 C 0.541 3.459 10 O -0.631 6.631 11 C -0.572 4.572 12 H 0.088 0.912 13 C 0.029 3.971 14 N -0.822 5.822 15 Si 0.998 3.002 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.248 1.248 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.136 4.136 22 C -0.096 4.096 23 H 0.101 0.899 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.394 0.606 29 H 0.274 0.726 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 -9.815 -9.044 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.038 3.962 4 H 0.113 0.887 5 C -0.210 4.210 6 C 0.044 3.956 7 H 0.074 0.926 8 N -0.383 5.383 9 C 0.345 3.655 10 O -0.518 6.518 11 C -0.608 4.608 12 H 0.107 0.893 13 C -0.186 4.186 14 N -0.452 5.452 15 Si 0.818 3.182 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.171 1.171 19 C -0.108 4.108 20 C -0.159 4.159 21 C -0.173 4.173 22 C -0.134 4.134 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.228 0.772 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.656 -10.168 -8.299 15.723 hybrid contribution -0.256 1.126 0.217 1.174 sum -8.912 -9.043 -8.082 15.050 Atomic orbital electron populations 1.22975 0.80017 1.03839 1.00518 1.87876 1.20981 1.27006 1.94530 1.23319 0.93117 0.85137 0.94651 0.88723 1.23955 0.98657 1.00272 0.98076 1.20976 0.97259 0.81971 0.95401 0.92623 1.45427 1.45979 1.03585 1.43300 1.18624 0.79650 0.86756 0.80461 1.90555 1.40162 1.83831 1.37299 1.21415 1.26039 0.89717 1.23663 0.89343 1.26979 0.92472 1.06475 0.92716 1.70198 1.19519 1.36415 1.19055 0.85013 0.78476 0.74597 0.80163 1.18636 1.19866 1.17099 1.23186 0.94787 0.97838 0.95029 1.22714 0.98890 1.00043 0.94217 1.22773 0.96790 0.98454 0.99279 1.22454 0.97744 0.95184 0.97992 0.88024 0.94216 0.92922 0.92749 0.89331 0.77187 0.91586 0.87761 0.92154 0.92157 0.89166 0.92363 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.86 113.37 1.23 1.65 16 2 O -0.39 -10.01 10.02 -148.98 -1.49 -11.51 16 3 C 0.10 2.75 4.10 30.89 0.13 2.87 16 4 H 0.10 2.52 7.90 -2.39 -0.02 2.50 16 5 C -0.17 -6.06 7.71 31.23 0.24 -5.82 16 6 C 0.15 6.12 4.09 45.33 0.19 6.31 16 7 H 0.06 2.67 7.54 -2.39 -0.02 2.65 16 8 N -0.73 -33.12 4.87 -445.18 -2.17 -35.29 16 9 C 0.54 31.66 7.75 86.36 0.67 32.33 16 10 O -0.63 -43.05 14.66 -4.29 -0.06 -43.12 16 11 C -0.57 -32.44 9.54 24.83 0.24 -32.20 16 12 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 13 C 0.03 1.60 5.50 85.30 0.47 2.07 16 14 N -0.82 -50.83 11.83 21.83 0.26 -50.57 16 15 Si 1.00 40.92 29.56 68.60 2.03 42.94 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 18 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 19 C -0.11 -3.25 0.92 -52.26 -0.05 -3.30 16 20 C -0.12 -3.20 7.60 30.89 0.23 -2.96 16 21 C -0.14 -3.46 8.08 31.23 0.25 -3.21 16 22 C -0.10 -2.56 7.47 30.89 0.23 -2.32 16 23 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 28 H 0.39 15.43 8.25 -92.71 -0.77 14.67 16 29 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.78 7.51 -2.39 -0.02 1.76 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.11 2.47 7.84 -2.39 -0.02 2.45 16 Total: -1.00 -74.63 294.34 2.71 -71.92 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.32 Total: 30.20 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 3.83 Total: -4.58 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.91 Total: -85.86 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.56 Total: -54.62 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -74.63 2.71 -71.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334609552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.269 kcal (2) G-P(sol) polarization free energy of solvation -74.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds