Wall clock time and date at job start Sun Mar 29 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99546 * 2 1 4 4 H 1.08997 * 112.89154 * 18.64958 * 3 2 1 5 5 C 1.53955 * 113.74463 * 247.22219 * 3 2 1 6 6 C 1.53949 * 87.29630 * 270.25517 * 5 3 2 7 7 H 1.08999 * 113.74859 * 89.74993 * 6 5 3 8 8 N 1.46506 * 113.66089 * 220.79614 * 6 5 3 9 9 C 1.34777 * 119.99873 * 252.18710 * 8 6 5 10 10 O 1.21695 * 119.99811 * 359.97438 * 9 8 6 11 11 C 1.46376 * 120.00195 * 180.02562 * 9 8 6 12 12 H 1.07999 * 119.99764 * 359.97438 * 11 9 8 13 13 C 1.40037 * 120.00112 * 180.02562 * 11 9 8 14 14 N 1.30672 * 120.00499 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99670 * 15 13 11 18 18 H 1.48500 * 109.47148 * 239.99461 * 15 13 11 19 19 C 1.52909 * 113.66085 * 149.99826 * 3 2 1 20 20 C 1.52909 * 121.13644 * 215.37905 * 19 3 2 21 21 C 1.53949 * 86.78256 * 100.81933 * 20 19 3 22 22 C 1.52908 * 121.13893 * 323.93997 * 19 3 2 23 23 H 1.08998 * 109.47027 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47703 * 300.00229 * 1 2 3 25 25 H 1.08996 * 109.46793 * 60.00579 * 1 2 3 26 26 H 1.08996 * 113.57873 * 155.64889 * 5 3 2 27 27 H 1.09002 * 113.57308 * 24.85590 * 5 3 2 28 28 H 0.96995 * 120.00050 * 71.90824 * 8 6 5 29 29 H 0.97000 * 120.00986 * 180.02562 * 14 13 11 30 30 H 1.09003 * 113.66662 * 215.28958 * 20 19 3 31 31 H 1.08997 * 113.66425 * 346.34801 * 20 19 3 32 32 H 1.08996 * 113.58405 * 270.12882 * 21 20 19 33 33 H 1.08999 * 113.58354 * 139.33601 * 21 20 19 34 34 H 1.09004 * 113.65979 * 13.65353 * 22 19 3 35 35 H 1.08997 * 113.66735 * 144.61498 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3134 2.0797 0.3211 5 6 2.7607 1.6500 -1.2993 6 6 4.0190 1.0510 -0.6452 7 1 4.1425 -0.0166 -0.8272 8 7 5.2394 1.8184 -0.9063 9 6 6.1749 1.3316 -1.7456 10 8 6.0061 0.2544 -2.2861 11 6 7.3945 2.0980 -2.0061 12 1 7.5444 3.0538 -1.5260 13 6 8.3662 1.5925 -2.8785 14 7 8.1846 0.4363 -3.4597 15 14 9.9223 2.5709 -3.2114 16 1 9.8858 3.8375 -2.4370 17 1 11.1059 1.7733 -2.8012 18 1 10.0120 2.8799 -4.6611 19 6 3.3678 1.3729 0.7003 20 6 3.7823 2.6056 1.5045 21 6 3.4005 1.8056 2.7632 22 6 3.6597 0.5295 1.9419 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 2.8354 2.7207 -1.4889 27 1 2.4111 1.0894 -2.1664 28 1 5.3722 2.6786 -0.4784 29 1 8.8579 0.0859 -4.0637 30 1 4.8459 2.8344 1.4375 31 1 3.1487 3.4751 1.3300 32 1 2.3589 1.9294 3.0594 33 1 4.0955 1.9391 3.5923 34 1 2.9282 -0.2594 2.1168 35 1 4.6884 0.1735 1.9970 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334609553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:57 Heat of formation + Delta-G solvation = -40.786575 kcal Electronic energy + Delta-G solvation = -17519.736823 eV Core-core repulsion = 14712.339743 eV Total energy + Delta-G solvation = -2807.397080 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52267 -37.06671 -36.69356 -34.07973 -32.43505 -31.17697 -26.84765 -26.24853 -25.50594 -24.35568 -23.48458 -20.69540 -19.64114 -18.05492 -17.19980 -16.29043 -15.59488 -15.49997 -15.25147 -14.66151 -14.18267 -14.02914 -13.25926 -12.99209 -12.46013 -12.24474 -12.07351 -11.81284 -11.66591 -11.58620 -11.38170 -11.03444 -10.97181 -10.71211 -10.42826 -10.25051 -10.08178 -9.91503 -9.59404 -9.14499 -8.81797 -7.53642 -7.38921 -6.13787 -4.59605 3.15261 3.23297 3.27693 3.67955 4.14170 4.60918 4.69546 4.77386 4.87252 4.98841 5.02984 5.19084 5.32686 5.37371 5.43086 5.47742 5.63094 5.65874 5.83075 5.97633 6.02699 6.04152 6.05832 6.21719 6.30223 6.46015 6.57479 6.77646 6.83411 7.37430 7.47360 7.99810 8.19492 8.40148 9.07012 9.61734 10.65600 10.85227 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036556 B = 0.006100 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.760886 B = 4589.226565 C = 5012.335203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.090 3.910 4 H 0.070 0.930 5 C -0.173 4.173 6 C 0.164 3.836 7 H 0.107 0.893 8 N -0.753 5.753 9 C 0.554 3.446 10 O -0.580 6.580 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.906 3.094 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.277 1.277 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.140 4.140 22 C -0.119 4.119 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.379 0.621 29 H 0.267 0.733 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 4.267 9.442 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.032 3.968 4 H 0.088 0.912 5 C -0.212 4.212 6 C 0.057 3.943 7 H 0.125 0.875 8 N -0.406 5.406 9 C 0.358 3.642 10 O -0.462 6.462 11 C -0.583 4.583 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.120 4.120 20 C -0.148 4.148 21 C -0.177 4.177 22 C -0.156 4.156 23 H 0.102 0.898 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.211 0.789 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.526 3.144 8.902 14.899 hybrid contribution 0.537 1.142 -0.049 1.263 sum -10.989 4.286 8.853 14.748 Atomic orbital electron populations 1.22772 0.81536 1.02498 0.99643 1.87913 1.19024 1.26579 1.94509 1.22637 0.92677 0.84569 0.96966 0.91237 1.24012 0.98559 1.01459 0.97189 1.21645 0.83909 0.97767 0.91011 0.87511 1.46078 1.20032 1.22867 1.51659 1.18252 0.82566 0.85777 0.77607 1.90599 1.79444 1.23489 1.52702 1.20930 1.02569 1.06062 1.28766 0.91507 1.25698 0.98848 0.94410 0.94218 1.70034 1.32418 1.15888 1.21372 0.86349 0.81652 0.80369 0.78556 1.18822 1.20196 1.20216 1.23226 0.95514 0.98344 0.94895 1.22547 1.01965 0.95364 0.94921 1.22833 1.00832 0.97350 0.96692 1.22577 1.02047 0.96348 0.94674 0.89777 0.94373 0.94145 0.89646 0.91068 0.78888 0.92223 0.88933 0.91680 0.90862 0.91688 0.91200 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.45 16 2 O -0.36 -5.52 10.20 -35.23 -0.36 -5.88 16 3 C 0.09 1.33 4.16 -26.28 -0.11 1.22 16 4 H 0.07 0.86 7.87 -51.93 -0.41 0.46 16 5 C -0.17 -3.00 7.72 -25.75 -0.20 -3.20 16 6 C 0.16 3.33 4.08 -67.48 -0.28 3.05 16 7 H 0.11 2.57 7.46 -51.93 -0.39 2.18 16 8 N -0.75 -17.15 5.24 -54.77 -0.29 -17.44 16 9 C 0.55 16.05 7.75 -12.99 -0.10 15.95 16 10 O -0.58 -19.21 14.62 5.19 0.08 -19.13 16 11 C -0.55 -15.64 9.54 -35.64 -0.34 -15.98 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 13 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 14 N -0.77 -23.45 11.83 55.55 0.66 -22.79 16 15 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 16 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 C -0.12 -1.86 0.98 -154.71 -0.15 -2.01 16 20 C -0.11 -1.47 7.15 -26.28 -0.19 -1.66 16 21 C -0.14 -1.69 8.08 -25.75 -0.21 -1.89 16 22 C -0.12 -1.76 7.71 -26.28 -0.20 -1.96 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.38 7.59 7.02 -40.82 -0.29 7.30 16 29 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 30 H 0.09 1.30 7.03 -51.93 -0.37 0.93 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 292.92 15.07 4.41 4.41 Total: -1.00 -34.42 292.92 -6.50 -40.93 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.21 Total: 7.19 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.77 Total: -2.63 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.37 Total: -40.23 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.28 Total: -25.01 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.42 -6.50 -40.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334609553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.141 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds