Wall clock time and date at job start Sun Mar 29 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99546 * 2 1 4 4 H 1.08997 * 112.89154 * 18.64958 * 3 2 1 5 5 C 1.53955 * 113.74463 * 247.22219 * 3 2 1 6 6 C 1.53949 * 87.29630 * 270.25517 * 5 3 2 7 7 H 1.08999 * 113.74859 * 89.74993 * 6 5 3 8 8 N 1.46506 * 113.66089 * 220.79614 * 6 5 3 9 9 C 1.34777 * 119.99873 * 252.18710 * 8 6 5 10 10 O 1.21695 * 119.99811 * 359.97438 * 9 8 6 11 11 C 1.46376 * 120.00195 * 180.02562 * 9 8 6 12 12 H 1.07999 * 119.99764 * 359.97438 * 11 9 8 13 13 C 1.40037 * 120.00112 * 180.02562 * 11 9 8 14 14 N 1.30672 * 120.00499 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47057 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99670 * 15 13 11 18 18 H 1.48500 * 109.47148 * 239.99461 * 15 13 11 19 19 C 1.52909 * 113.66085 * 149.99826 * 3 2 1 20 20 C 1.52909 * 121.13644 * 215.37905 * 19 3 2 21 21 C 1.53949 * 86.78256 * 100.81933 * 20 19 3 22 22 C 1.52908 * 121.13893 * 323.93997 * 19 3 2 23 23 H 1.08998 * 109.47027 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47703 * 300.00229 * 1 2 3 25 25 H 1.08996 * 109.46793 * 60.00579 * 1 2 3 26 26 H 1.08996 * 113.57873 * 155.64889 * 5 3 2 27 27 H 1.09002 * 113.57308 * 24.85590 * 5 3 2 28 28 H 0.96995 * 120.00050 * 71.90824 * 8 6 5 29 29 H 0.97000 * 120.00986 * 180.02562 * 14 13 11 30 30 H 1.09003 * 113.66662 * 215.28958 * 20 19 3 31 31 H 1.08997 * 113.66425 * 346.34801 * 20 19 3 32 32 H 1.08996 * 113.58405 * 270.12882 * 21 20 19 33 33 H 1.08999 * 113.58354 * 139.33601 * 21 20 19 34 34 H 1.09004 * 113.65979 * 13.65353 * 22 19 3 35 35 H 1.08997 * 113.66735 * 144.61498 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3134 2.0797 0.3211 5 6 2.7607 1.6500 -1.2993 6 6 4.0190 1.0510 -0.6452 7 1 4.1425 -0.0166 -0.8272 8 7 5.2394 1.8184 -0.9063 9 6 6.1749 1.3316 -1.7456 10 8 6.0061 0.2544 -2.2861 11 6 7.3945 2.0980 -2.0061 12 1 7.5444 3.0538 -1.5260 13 6 8.3662 1.5925 -2.8785 14 7 8.1846 0.4363 -3.4597 15 14 9.9223 2.5709 -3.2114 16 1 9.8858 3.8375 -2.4370 17 1 11.1059 1.7733 -2.8012 18 1 10.0120 2.8799 -4.6611 19 6 3.3678 1.3729 0.7003 20 6 3.7823 2.6056 1.5045 21 6 3.4005 1.8056 2.7632 22 6 3.6597 0.5295 1.9419 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 2.8354 2.7207 -1.4889 27 1 2.4111 1.0894 -2.1664 28 1 5.3722 2.6786 -0.4784 29 1 8.8579 0.0859 -4.0637 30 1 4.8459 2.8344 1.4375 31 1 3.1487 3.4751 1.3300 32 1 2.3589 1.9294 3.0594 33 1 4.0955 1.9391 3.5923 34 1 2.9282 -0.2594 2.1168 35 1 4.6884 0.1735 1.9970 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334609553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:57 Heat of formation + Delta-G solvation = -66.226404 kcal Electronic energy + Delta-G solvation = -17520.839977 eV Core-core repulsion = 14712.339743 eV Total energy + Delta-G solvation = -2808.500234 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82970 -38.98579 -37.97428 -35.61139 -34.57739 -33.05377 -28.61969 -27.54950 -26.66054 -25.59914 -24.95808 -22.08698 -21.54528 -19.60439 -18.90419 -17.61585 -17.50725 -16.79912 -16.57554 -16.02641 -15.68877 -15.46831 -14.84611 -14.57974 -14.32722 -13.68262 -13.34161 -13.27579 -13.10069 -12.86111 -12.77961 -12.73690 -12.60844 -12.33661 -11.97905 -11.86723 -11.32423 -11.17019 -10.93781 -10.90801 -10.34073 -9.83008 -9.33795 -8.28392 -6.85642 1.39651 1.40213 1.58342 2.24846 2.47224 2.61624 3.18821 3.45849 3.52956 3.66249 3.84107 3.87034 4.00849 4.12361 4.26644 4.54093 4.55206 4.59299 4.61845 4.80446 4.85511 4.89878 4.95842 5.03659 5.06552 5.12036 5.23712 5.31761 5.44499 5.60512 5.89906 6.26361 6.31255 6.37090 6.86889 7.60050 8.51922 8.69295 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036556 B = 0.006100 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.760886 B = 4589.226565 C = 5012.335203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.109 3.891 4 H 0.111 0.889 5 C -0.171 4.171 6 C 0.139 3.861 7 H 0.053 0.947 8 N -0.738 5.738 9 C 0.535 3.465 10 O -0.636 6.636 11 C -0.573 4.573 12 H 0.089 0.911 13 C 0.026 3.974 14 N -0.825 5.825 15 Si 1.000 3.000 16 H -0.245 1.245 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.115 4.115 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.129 4.129 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.049 0.951 28 H 0.395 0.605 29 H 0.274 0.726 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 7.040 11.141 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.051 3.949 4 H 0.128 0.872 5 C -0.210 4.210 6 C 0.033 3.967 7 H 0.071 0.929 8 N -0.391 5.391 9 C 0.340 3.660 10 O -0.524 6.524 11 C -0.610 4.610 12 H 0.107 0.893 13 C -0.188 4.188 14 N -0.455 5.455 15 Si 0.819 3.181 16 H -0.167 1.167 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.116 4.116 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.167 4.167 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.229 0.771 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.272 5.953 10.652 17.306 hybrid contribution 0.674 0.189 -0.580 0.909 sum -11.598 6.141 10.072 16.543 Atomic orbital electron populations 1.23031 0.79134 1.03824 1.01159 1.87894 1.21760 1.27132 1.94470 1.22497 0.92831 0.85488 0.94102 0.87155 1.24002 0.97229 1.01785 0.97984 1.21785 0.83976 0.94932 0.96041 0.92874 1.45704 1.19888 1.23349 1.50154 1.18706 0.83967 0.85319 0.78041 1.90550 1.80843 1.25835 1.55156 1.21477 1.02976 1.06983 1.29521 0.89321 1.27024 1.03175 0.95416 0.93190 1.70216 1.34430 1.18454 1.22396 0.84943 0.75493 0.78853 0.78786 1.16733 1.19403 1.19362 1.23303 0.95157 1.00491 0.92634 1.22579 1.01896 0.95314 0.94585 1.22772 1.02642 0.93991 0.96121 1.22605 1.00698 0.97888 0.95510 0.88781 0.91902 0.93420 0.87998 0.93205 0.77056 0.91651 0.90036 0.88841 0.88334 0.90404 0.91206 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.85 113.37 1.23 1.70 16 2 O -0.39 -11.65 10.20 -148.98 -1.52 -13.17 16 3 C 0.11 3.01 4.16 30.89 0.13 3.14 16 4 H 0.11 2.21 7.87 -2.39 -0.02 2.19 16 5 C -0.17 -5.95 7.72 31.23 0.24 -5.71 16 6 C 0.14 5.89 4.08 45.28 0.18 6.08 16 7 H 0.05 2.81 7.46 -2.39 -0.02 2.79 16 8 N -0.74 -34.74 5.24 -445.42 -2.33 -37.07 16 9 C 0.54 32.48 7.75 86.36 0.67 33.15 16 10 O -0.64 -45.02 14.62 -4.33 -0.06 -45.09 16 11 C -0.57 -33.38 9.54 24.83 0.24 -33.14 16 12 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 13 C 0.03 1.52 5.50 85.30 0.47 1.99 16 14 N -0.83 -52.28 11.83 21.83 0.26 -52.02 16 15 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 16 H -0.24 -9.34 7.11 99.48 0.71 -8.63 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 19 C -0.11 -3.48 0.98 -52.31 -0.05 -3.53 16 20 C -0.11 -2.50 7.15 30.88 0.22 -2.28 16 21 C -0.12 -2.44 8.08 31.23 0.25 -2.18 16 22 C -0.13 -3.74 7.71 30.88 0.24 -3.50 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.39 15.82 7.02 -92.71 -0.65 15.16 16 29 H 0.27 15.63 8.29 -92.71 -0.77 14.86 16 30 H 0.08 2.11 7.03 -2.39 -0.02 2.10 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.99 7.83 -2.38 -0.02 1.97 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -80.61 292.92 2.62 -78.00 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.43 Total: 29.82 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 3.82 Total: -4.28 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -2.08 Total: -89.10 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -1.58 Total: -58.26 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -80.61 2.62 -78.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334609553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.769 kcal (2) G-P(sol) polarization free energy of solvation -80.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds