Wall clock time and date at job start Sun Mar 29 2020 22:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47014 * 2 1 4 4 C 1.37102 * 119.99775 * 92.36480 * 3 2 1 5 5 H 1.07997 * 120.00226 * 318.36931 * 4 3 2 6 6 C 1.38951 * 119.99330 * 138.37449 * 4 3 2 7 7 N 1.31416 * 119.99524 * 158.82868 * 6 4 3 8 8 Si 1.86794 * 120.00406 * 338.81765 * 6 4 3 9 9 H 1.48502 * 109.47080 * 95.11912 * 8 6 4 10 10 H 1.48493 * 109.47219 * 335.12375 * 8 6 4 11 11 H 1.48497 * 109.47210 * 215.11952 * 8 6 4 12 12 C 1.34771 * 120.00016 * 272.36568 * 3 2 1 13 13 O 1.21289 * 120.00477 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99990 * 359.97438 * 12 3 2 15 15 H 1.09003 * 115.56352 * 22.19914 * 14 12 3 16 16 C 1.53187 * 117.52163 * 167.96935 * 14 12 3 17 17 C 1.52108 * 59.76690 * 107.42568 * 16 14 12 18 18 C 1.53718 * 121.73415 * 111.09623 * 17 16 14 19 19 C 1.54701 * 103.68981 * 143.47497 * 18 17 16 20 20 O 1.44492 * 104.87222 * 23.84295 * 19 18 17 21 21 C 1.44640 * 105.46350 * 320.02486 * 20 19 18 22 22 H 1.09006 * 109.47049 * 304.65495 * 1 2 3 23 23 H 1.08993 * 109.47625 * 64.65628 * 1 2 3 24 24 H 1.08995 * 109.47262 * 184.66257 * 1 2 3 25 25 H 1.08997 * 109.46797 * 239.99960 * 2 1 3 26 26 H 1.09005 * 109.47353 * 119.99857 * 2 1 3 27 27 H 0.96998 * 119.99790 * 179.97438 * 7 6 4 28 28 H 1.09004 * 117.52281 * 214.85016 * 16 14 12 29 29 H 1.08995 * 117.52130 * 0.02562 * 16 14 12 30 30 H 1.09003 * 110.58003 * 262.02047 * 18 17 16 31 31 H 1.08989 * 110.58209 * 24.92381 * 18 17 16 32 32 H 1.08996 * 110.36074 * 142.69477 * 19 18 17 33 33 H 1.09003 * 110.35585 * 264.99550 * 19 18 17 34 34 H 1.08999 * 110.42033 * 280.87648 * 21 20 19 35 35 H 1.09002 * 110.41927 * 158.42203 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2930 2.0112 1.1864 5 1 1.6277 1.8906 2.0285 6 6 3.4273 2.8048 1.3051 7 7 3.4931 3.7204 2.2455 8 14 4.8588 2.5702 0.1282 9 1 4.7384 3.5332 -0.9959 10 1 4.8403 1.1839 -0.4037 11 1 6.1357 2.8071 0.8483 12 6 2.1975 2.0326 -1.1662 13 8 2.6022 3.1760 -1.1663 14 6 1.8961 1.3400 -2.4702 15 1 1.2071 0.4977 -2.4071 16 6 1.8451 2.2029 -3.7348 17 6 3.0144 1.2592 -3.4982 18 6 3.2292 0.0057 -4.3616 19 6 4.7676 -0.0878 -4.4948 20 8 5.2832 0.6255 -3.3489 21 6 4.4278 1.7821 -3.1977 22 1 -0.3633 0.5844 0.8454 23 1 -0.3634 0.4398 -0.9287 24 1 -0.3633 -1.0242 0.0835 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.2851 4.2742 2.3286 28 1 1.1233 1.9276 -4.5038 29 1 2.0300 3.2713 -3.6233 30 1 2.8337 -0.8775 -3.8598 31 1 2.7668 0.1309 -5.3405 32 1 5.0879 -1.1293 -4.4688 33 1 5.0979 0.3884 -5.4180 34 1 4.7064 2.5570 -3.9118 35 1 4.4829 2.1653 -2.1788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334611295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:24 Heat of formation + Delta-G solvation = -34.815190 kcal Electronic energy + Delta-G solvation = -18399.802714 eV Core-core repulsion = 15592.664572 eV Total energy + Delta-G solvation = -2807.138142 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14375 -38.36856 -35.65620 -34.72127 -32.23523 -30.21595 -29.63863 -27.26271 -25.50069 -23.19227 -22.69042 -21.85914 -19.70655 -18.68778 -17.24981 -16.49477 -15.96648 -15.51261 -15.05154 -14.80885 -14.09485 -13.68251 -13.47750 -13.19373 -12.88069 -12.73028 -12.38412 -12.25429 -11.77948 -11.68739 -11.35662 -11.06488 -10.90298 -10.69963 -10.53902 -10.22890 -9.94331 -9.87305 -9.77005 -9.36575 -8.49641 -8.40068 -7.57684 -6.17785 -3.91909 3.18006 3.53762 3.57645 3.61517 4.04339 4.29009 4.41283 4.56936 4.67329 4.93737 5.02228 5.12651 5.22087 5.25590 5.53190 5.58326 5.62115 5.69309 5.76473 5.82920 5.89368 5.93220 5.96603 6.02781 6.08223 6.22382 6.31222 6.40234 6.47185 6.74187 6.96707 7.87639 8.01144 8.81394 8.95251 9.46070 9.86729 10.87385 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.012258 C = 0.009607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.504163 B = 2283.734406 C = 2913.759052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.456 5.456 4 C -0.352 4.352 5 H 0.094 0.906 6 C 0.093 3.907 7 N -0.863 5.863 8 Si 0.904 3.096 9 H -0.253 1.253 10 H -0.269 1.269 11 H -0.308 1.308 12 C 0.474 3.526 13 O -0.548 6.548 14 C -0.159 4.159 15 H 0.117 0.883 16 C -0.132 4.132 17 C -0.145 4.145 18 C -0.118 4.118 19 C 0.044 3.956 20 O -0.372 6.372 21 C 0.061 3.939 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.272 0.728 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 -9.014 -12.914 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.177 5.177 4 C -0.478 4.478 5 H 0.112 0.888 6 C -0.117 4.117 7 N -0.498 5.498 8 Si 0.735 3.265 9 H -0.180 1.180 10 H -0.194 1.194 11 H -0.237 1.237 12 C 0.263 3.737 13 O -0.431 6.431 14 C -0.180 4.180 15 H 0.134 0.866 16 C -0.169 4.169 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.032 4.032 20 O -0.291 6.291 21 C -0.015 4.015 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.749 -8.377 -12.627 15.253 hybrid contribution 0.392 -0.142 -0.571 0.708 sum -1.357 -8.519 -13.198 15.767 Atomic orbital electron populations 1.22179 0.97010 1.00836 1.02295 1.21566 0.93779 0.85543 1.01663 1.43575 1.58742 1.10009 1.05327 1.18782 1.09193 1.29893 0.89890 0.88840 1.25291 0.97991 0.93142 0.95231 1.69776 1.28910 1.17047 1.34068 0.86708 0.79164 0.79503 0.81093 1.18032 1.19431 1.23734 1.19333 0.83594 0.86532 0.84204 1.90522 1.48442 1.18000 1.86147 1.22464 1.01838 1.02796 0.90904 0.86550 1.22858 0.98335 0.98368 0.97342 1.22100 0.92170 0.98867 1.01451 1.22418 0.96987 0.96691 0.99439 1.23406 0.92477 0.97613 0.89753 1.89198 1.53370 1.38432 1.48088 1.23326 0.86003 0.87942 1.04238 0.91940 0.93172 0.92779 0.92454 0.90552 0.91857 0.88228 0.87277 0.90337 0.90192 0.89268 0.92447 0.91794 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.10 37.16 0.38 -2.24 16 2 C 0.10 1.86 5.70 -4.04 -0.02 1.84 16 3 N -0.46 -11.19 2.17 -114.81 -0.25 -11.44 16 4 C -0.35 -10.14 9.69 -14.93 -0.14 -10.28 16 5 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 6 C 0.09 2.80 4.80 -17.47 -0.08 2.72 16 7 N -0.86 -26.96 13.96 55.50 0.77 -26.18 16 8 Si 0.90 24.95 22.17 -169.99 -3.77 21.18 16 9 H -0.25 -7.12 5.66 56.52 0.32 -6.80 16 10 H -0.27 -7.30 6.96 56.52 0.39 -6.90 16 11 H -0.31 -8.39 7.11 56.52 0.40 -7.99 16 12 C 0.47 11.48 5.06 -10.99 -0.06 11.42 16 13 O -0.55 -15.30 11.19 5.55 0.06 -15.23 16 14 C -0.16 -2.93 5.04 -92.13 -0.46 -3.39 16 15 H 0.12 1.83 5.87 -51.93 -0.30 1.53 16 16 C -0.13 -2.08 9.82 -27.09 -0.27 -2.35 16 17 C -0.14 -2.44 2.50 -154.69 -0.39 -2.83 16 18 C -0.12 -1.50 6.88 -25.46 -0.18 -1.68 16 19 C 0.04 0.59 7.65 38.05 0.29 0.89 16 20 O -0.37 -7.07 11.65 -35.23 -0.41 -7.48 16 21 C 0.06 1.20 7.17 37.51 0.27 1.47 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 0.76 7.37 -51.93 -0.38 0.38 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 26 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 27 H 0.27 8.00 8.31 -40.82 -0.34 7.66 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.11 1.92 7.73 -51.93 -0.40 1.51 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.81 8.14 -51.94 -0.42 0.38 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.11 2.60 1.66 -51.93 -0.09 2.51 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -34.35 273.97 -5.09 -39.44 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.96 Total: 0.03 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.66 Total: -4.44 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.53 Total: -37.62 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.35 Total: -22.71 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -3.77 Total: 21.18 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.35 -5.09 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334611295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.623 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds