Wall clock time and date at job start Sun Mar 29 2020 22:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47014 * 2 1 4 4 C 1.37102 * 119.99775 * 92.36480 * 3 2 1 5 5 H 1.07997 * 120.00226 * 318.36931 * 4 3 2 6 6 C 1.38951 * 119.99330 * 138.37449 * 4 3 2 7 7 N 1.31416 * 119.99524 * 158.82868 * 6 4 3 8 8 Si 1.86794 * 120.00406 * 338.81765 * 6 4 3 9 9 H 1.48502 * 109.47080 * 95.11912 * 8 6 4 10 10 H 1.48493 * 109.47219 * 335.12375 * 8 6 4 11 11 H 1.48497 * 109.47210 * 215.11952 * 8 6 4 12 12 C 1.34771 * 120.00016 * 272.36568 * 3 2 1 13 13 O 1.21289 * 120.00477 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99990 * 359.97438 * 12 3 2 15 15 H 1.09003 * 115.56352 * 22.19914 * 14 12 3 16 16 C 1.53187 * 117.52163 * 167.96935 * 14 12 3 17 17 C 1.52108 * 59.76690 * 107.42568 * 16 14 12 18 18 C 1.53718 * 121.73415 * 111.09623 * 17 16 14 19 19 C 1.54701 * 103.68981 * 143.47497 * 18 17 16 20 20 O 1.44492 * 104.87222 * 23.84295 * 19 18 17 21 21 C 1.44640 * 105.46350 * 320.02486 * 20 19 18 22 22 H 1.09006 * 109.47049 * 304.65495 * 1 2 3 23 23 H 1.08993 * 109.47625 * 64.65628 * 1 2 3 24 24 H 1.08995 * 109.47262 * 184.66257 * 1 2 3 25 25 H 1.08997 * 109.46797 * 239.99960 * 2 1 3 26 26 H 1.09005 * 109.47353 * 119.99857 * 2 1 3 27 27 H 0.96998 * 119.99790 * 179.97438 * 7 6 4 28 28 H 1.09004 * 117.52281 * 214.85016 * 16 14 12 29 29 H 1.08995 * 117.52130 * 0.02562 * 16 14 12 30 30 H 1.09003 * 110.58003 * 262.02047 * 18 17 16 31 31 H 1.08989 * 110.58209 * 24.92381 * 18 17 16 32 32 H 1.08996 * 110.36074 * 142.69477 * 19 18 17 33 33 H 1.09003 * 110.35585 * 264.99550 * 19 18 17 34 34 H 1.08999 * 110.42033 * 280.87648 * 21 20 19 35 35 H 1.09002 * 110.41927 * 158.42203 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2930 2.0112 1.1864 5 1 1.6277 1.8906 2.0285 6 6 3.4273 2.8048 1.3051 7 7 3.4931 3.7204 2.2455 8 14 4.8588 2.5702 0.1282 9 1 4.7384 3.5332 -0.9959 10 1 4.8403 1.1839 -0.4037 11 1 6.1357 2.8071 0.8483 12 6 2.1975 2.0326 -1.1662 13 8 2.6022 3.1760 -1.1663 14 6 1.8961 1.3400 -2.4702 15 1 1.2071 0.4977 -2.4071 16 6 1.8451 2.2029 -3.7348 17 6 3.0144 1.2592 -3.4982 18 6 3.2292 0.0057 -4.3616 19 6 4.7676 -0.0878 -4.4948 20 8 5.2832 0.6255 -3.3489 21 6 4.4278 1.7821 -3.1977 22 1 -0.3633 0.5844 0.8454 23 1 -0.3634 0.4398 -0.9287 24 1 -0.3633 -1.0242 0.0835 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.2851 4.2742 2.3286 28 1 1.1233 1.9276 -4.5038 29 1 2.0300 3.2713 -3.6233 30 1 2.8337 -0.8775 -3.8598 31 1 2.7668 0.1309 -5.3405 32 1 5.0879 -1.1293 -4.4688 33 1 5.0979 0.3884 -5.4180 34 1 4.7064 2.5570 -3.9118 35 1 4.4829 2.1653 -2.1788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334611295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:23 Heat of formation + Delta-G solvation = -60.499453 kcal Electronic energy + Delta-G solvation = -18400.916467 eV Core-core repulsion = 15592.664572 eV Total energy + Delta-G solvation = -2808.251895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63710 -39.96372 -37.16089 -36.47294 -34.41016 -31.34075 -31.24766 -28.68964 -27.37937 -24.83218 -23.77021 -23.43103 -21.17290 -20.39360 -19.06544 -18.05812 -17.62834 -16.79252 -16.74512 -16.30477 -15.82392 -15.44593 -15.14346 -14.79670 -14.29510 -14.25215 -13.99744 -13.72167 -13.28401 -13.20938 -12.81967 -12.62447 -12.50093 -12.20825 -12.12074 -11.95362 -11.78423 -11.30737 -11.02598 -10.85525 -10.63558 -10.27994 -9.59721 -8.48706 -6.20052 1.14473 1.31105 1.36930 1.74861 2.32434 2.56467 2.78867 2.96561 3.13881 3.36796 3.66586 3.82269 3.93035 4.06625 4.20426 4.25442 4.45811 4.49358 4.51120 4.53812 4.67116 4.72289 4.82094 4.82443 4.96676 5.02751 5.05482 5.08251 5.16866 5.42981 5.67386 5.76900 5.82494 6.73785 6.89380 7.32677 7.88890 8.60196 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.012258 C = 0.009607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.504163 B = 2283.734406 C = 2913.759052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 N -0.475 5.475 4 C -0.346 4.346 5 H 0.070 0.930 6 C 0.045 3.955 7 N -0.907 5.907 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.265 1.265 11 H -0.311 1.311 12 C 0.469 3.531 13 O -0.594 6.594 14 C -0.176 4.176 15 H 0.153 0.847 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.105 4.105 19 C 0.033 3.967 20 O -0.404 6.404 21 C 0.049 3.951 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.272 0.728 28 H 0.150 0.850 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 -11.846 -16.366 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.031 4.031 3 N -0.196 5.196 4 C -0.473 4.473 5 H 0.088 0.912 6 C -0.159 4.159 7 N -0.545 5.545 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.190 1.190 11 H -0.241 1.241 12 C 0.260 3.740 13 O -0.480 6.480 14 C -0.197 4.197 15 H 0.170 0.830 16 C -0.149 4.149 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.042 4.042 20 O -0.324 6.324 21 C -0.028 4.028 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.168 0.832 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.973 -11.257 -16.091 19.861 hybrid contribution 0.715 0.712 0.447 1.104 sum -2.257 -10.544 -15.645 19.001 Atomic orbital electron populations 1.22097 0.94440 1.03089 1.01687 1.21852 0.95807 0.82399 1.03013 1.43845 1.59327 1.12310 1.04158 1.18741 1.07978 1.29594 0.91033 0.91247 1.25901 1.00100 0.93499 0.96406 1.69855 1.29711 1.18791 1.36149 0.85840 0.77027 0.79057 0.78832 1.19770 1.19019 1.24120 1.20397 0.81277 0.86236 0.86048 1.90484 1.49969 1.20383 1.87179 1.22439 1.04376 1.04570 0.88288 0.83001 1.23010 0.98675 0.96758 0.96494 1.22221 0.90215 1.00907 1.00802 1.22496 0.96462 0.94750 1.00534 1.23807 0.93229 0.98496 0.88691 1.89158 1.54043 1.38475 1.50680 1.23230 0.88621 0.89009 1.01900 0.94610 0.92107 0.88647 0.89395 0.90942 0.91893 0.83198 0.89897 0.88767 0.86348 0.86975 0.90484 0.91008 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 10.10 71.98 0.73 -3.71 16 2 C 0.09 3.25 5.70 86.38 0.49 3.74 16 3 N -0.48 -23.22 2.17 -635.53 -1.38 -24.60 16 4 C -0.35 -20.59 9.69 84.04 0.81 -19.78 16 5 H 0.07 4.35 8.06 -2.91 -0.02 4.33 16 6 C 0.05 2.84 4.80 84.93 0.41 3.25 16 7 N -0.91 -59.35 13.96 21.66 0.30 -59.05 16 8 Si 0.96 54.30 22.17 68.60 1.52 55.82 16 9 H -0.27 -15.79 5.66 99.48 0.56 -15.22 16 10 H -0.27 -14.46 6.96 99.48 0.69 -13.77 16 11 H -0.31 -17.28 7.11 99.48 0.71 -16.57 16 12 C 0.47 22.43 5.06 87.66 0.44 22.87 16 13 O -0.59 -33.90 11.19 -3.06 -0.03 -33.93 16 14 C -0.18 -5.88 5.04 -11.77 -0.06 -5.94 16 15 H 0.15 3.93 5.87 -2.39 -0.01 3.91 16 16 C -0.11 -3.11 9.82 30.36 0.30 -2.81 16 17 C -0.14 -4.19 2.50 -52.30 -0.13 -4.32 16 18 C -0.11 -2.05 6.88 31.42 0.22 -1.83 16 19 C 0.03 0.74 7.65 72.56 0.56 1.30 16 20 O -0.40 -14.49 11.65 -148.98 -1.74 -16.23 16 21 C 0.05 1.86 7.17 72.21 0.52 2.38 16 22 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.06 1.61 7.37 -2.39 -0.02 1.59 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.09 2.59 6.55 -2.39 -0.02 2.57 16 26 H 0.07 2.59 8.02 -2.38 -0.02 2.57 16 27 H 0.27 16.83 8.31 -92.71 -0.77 16.06 16 28 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.08 2.77 7.73 -2.39 -0.02 2.75 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 3.08 1.66 -2.39 0.00 3.08 16 Total: -1.00 -80.84 273.97 3.88 -76.96 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 0.92 Total: 5.88 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.28 Total: -4.85 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.08 Total: -83.65 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.77 Total: -50.16 kcal Atomic # 14 Polarization: 54.30 SS G_CDS: 1.52 Total: 55.82 kcal Total: -80.84 3.88 -76.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334611295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.459 kcal (2) G-P(sol) polarization free energy of solvation -80.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds